View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4087_low_22 (Length: 237)

Name: NF4087_low_22
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4087_low_22
NF4087_low_22
[»] chr7 (7 HSPs)
chr7 (21-147)||(3480779-3480905)
chr7 (21-138)||(18503131-18503247)
chr7 (25-144)||(6110132-6110246)
chr7 (50-138)||(15673034-15673123)
chr7 (25-140)||(25102630-25102744)
chr7 (51-125)||(32585831-32585904)
chr7 (92-137)||(34703029-34703074)
[»] chr5 (8 HSPs)
chr5 (30-145)||(42683974-42684088)
chr5 (21-147)||(15922237-15922362)
chr5 (21-145)||(5868323-5868446)
chr5 (30-145)||(7883836-7883950)
chr5 (25-145)||(29860854-29860973)
chr5 (25-126)||(25347119-25347219)
chr5 (20-147)||(2498920-2499046)
chr5 (25-128)||(33134090-33134192)
[»] chr1 (6 HSPs)
chr1 (21-140)||(10306845-10306963)
chr1 (25-137)||(37347068-37347179)
chr1 (30-138)||(49549507-49549614)
chr1 (89-138)||(48527377-48527426)
chr1 (25-145)||(28622969-28623088)
chr1 (55-137)||(19909994-19910075)
[»] chr2 (7 HSPs)
chr2 (20-147)||(37485585-37485711)
chr2 (25-147)||(40619752-40619873)
chr2 (92-147)||(19695490-19695545)
chr2 (27-138)||(27338714-27338824)
chr2 (92-136)||(41595236-41595280)
chr2 (25-138)||(13996209-13996321)
chr2 (92-144)||(13349623-13349675)
[»] chr6 (5 HSPs)
chr6 (21-145)||(23404473-23404596)
chr6 (25-135)||(29979453-29979562)
chr6 (25-146)||(10789479-10789600)
chr6 (30-135)||(9314804-9314907)
chr6 (55-137)||(12255105-12255186)
[»] chr4 (7 HSPs)
chr4 (25-141)||(28115982-28116097)
chr4 (51-145)||(3767722-3767815)
chr4 (92-147)||(21342170-21342225)
chr4 (25-142)||(34513810-34513926)
chr4 (80-137)||(3692655-3692712)
chr4 (20-138)||(45499228-45499345)
chr4 (30-74)||(5787362-5787406)
[»] chr3 (6 HSPs)
chr3 (25-145)||(21748451-21748570)
chr3 (50-145)||(28457860-28457954)
chr3 (92-145)||(21495072-21495124)
chr3 (93-144)||(40701149-40701200)
chr3 (115-146)||(30271847-30271878)
chr3 (95-140)||(7818541-7818586)
[»] chr8 (8 HSPs)
chr8 (25-145)||(32962042-32962161)
chr8 (92-145)||(37246151-37246204)
chr8 (26-145)||(15268612-15268730)
chr8 (92-147)||(16295322-16295377)
chr8 (92-147)||(16303024-16303079)
chr8 (21-145)||(8491071-8491193)
chr8 (21-137)||(16456490-16456605)
chr8 (94-137)||(11657028-11657071)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 3480779 - 3480905
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3480779 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcattaaacatgagatttatgcatgata 3480878  T
Q  121 tgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||||||||| ||||||    
T  3480879 tgattaatatatcatatcatatctctc 3480905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 18503131 - 18503247
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    |||||||| |||||||||  | |||||| |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||| ||||| ||| ||||    
T  18503131 tcaagatagaaattacaaatgaaaatcaggataggataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgatatttaagcaggata 18503229  T
Q  121 tgattaatatatcatatc 138  Q
    |||||||| |||||||||    
T  18503230 tgattaatgtatcatatc 18503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 6110246 - 6110132
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || | | |||| ||||| |||||||||||||| ||| ||||| || |||||||||||||||||||||||   || |||||||    
T  6110246 gatataaattacaaaggaaagttaagataggatagaaaaatgatttattt-tatcttatccctttgatgcatcaaacatgagattta---at-atatgat 6110152  T
Q  125 taatatatcatatcatgtct 144  Q
    |||| ||||| |||||||||    
T  6110151 taatgtatcaaatcatgtct 6110132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 15673034 - 15673123
Alignment:
Q  50 gataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatg--atatgattaatatatcatatc 138  Q
    |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| ||| |  ||||||||||| |||||||||    
T  15673034 gatatgataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgagatttaagcaggatatatgattaatgtatcatatc 15673123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 25102744 - 25102630
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    ||||||||||||||  | || |||||||| |||| |||||| |||||||| |||  ||||  | || |||||||||||||||||||| | |  || ||||    
T  25102744 gataaaaattacaaaagtaattcacgataggatacgaaaataatttattt-tatcctatctatttggtgcatcaaacatgagatttaagtagaatgtgat 25102646  T
Q  125 taatatatcatatcat 140  Q
     |||||||||||||||    
T  25102645 aaatatatcatatcat 25102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 32585831 - 32585904
Alignment:
Q  51 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatt 125  Q
    ||||||||||||||| |||||||| |||  ||||| | || ||||||||||||||||||||  || |||||||||    
T  32585831 ataagataggaaaattatttattt-tatcatatcattttgttgcatcaaacatgagatttaaacaggatatgatt 32585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 34703074 - 34703029
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatat 137  Q
    ||||||||||||| |||||| ||| |||||||||||| ||||||||    
T  34703074 tgcatcaaacatgtgatttaagcaggatatgattaatgtatcatat 34703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 42683974 - 42684088
Alignment:
Q  30 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 129  Q
    ||||||||| || || ||| |||| ||||| |||||||||||||| ||| ||||| || |||||| | |||||||||||||| ||| ||||||||||||     
T  42683974 aaattacaaaggaaagtcaggatatgatagaaaaatgatttattt-tatcttatccctttgatgcttgaaacatgagatttaagcaggatatgattaatg 42684072  T
Q  130 tatcatatcatgtctc 145  Q
    ||||||||||||||||    
T  42684073 tatcatatcatgtctc 42684088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 15922237 - 15922362
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    |||| ||| ||||||||| || || ||| |||| ||||| ||||| |||||||| |||  ||||||| ||||||||||||||||||||||| ||| ||||    
T  15922237 tcaaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattt-tatcatatcactttgatgcatcaaacatgagatttaagcaagata 15922335  T
Q  121 tgattaatatatcatatcatgtctctc 147  Q
    |||||||| ||||||||| ||| ||||    
T  15922336 tgattaatgtatcatatcctgtatctc 15922362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 5868323 - 5868446
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    |||||||| ||||||||| || || ||  |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| | | |||     
T  5868323 tcaagatagaaattacaaaggaaagtcgggataggataggaaaatggtttattt-tatcctatctctttggtgcatcaaacatgagatttaagtaggatg 5868421  T
Q  121 tgattaatatatcatatcatgtctc 145  Q
    |||||||||||||||||| ||||||    
T  5868422 tgattaatatatcatatcttgtctc 5868446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 7883836 - 7883950
Alignment:
Q  30 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 129  Q
    ||||||||| || || |||  ||| |||||||||||| ||||||| |||  |||| || ||||||||||||||| ||||||| ||| ||||||||||||     
T  7883836 aaattacaaaggaaattcagaataggataggaaaatggtttattt-tatcctatccctttgatgcatcaaacataagatttaagcaggatatgattaatg 7883934  T
Q  130 tatcatatcatgtctc 145  Q
    ||||||||| ||||||    
T  7883935 tatcatatcctgtctc 7883950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 29860973 - 29860854
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || ||| |||| |||||| ||||| ||||||| |||  |||| || || |||||||||||||| ||||| |||  |||||||    
T  29860973 gatataaattacaaaggaaagtcatgatatgatagggaaatggtttattt-tatcctatctctttggtgcatcaaacatgaaatttaagcagaatatgat 29860875  T
Q  125 taatatatcatatcatgtctc 145  Q
    |||| ||||||||||||||||    
T  29860874 taatgtatcatatcatgtctc 29860854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 25347119 - 25347219
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || |||||| |||| |||||||||||| ||||||| |||  |||| || || |||||||||||||||||||| | | ||||||||    
T  25347119 gatagaaattacaaaggaaaatcaggatatgataggaaaatggtttattt-tatcctatccctttggtgcatcaaacatgagatttaaggaggatatgat 25347217  T
Q  125 ta 126  Q
    ||    
T  25347218 ta 25347219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 2499046 - 2498920
Alignment:
Q  20 ttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgat 119  Q
    |||| |||||||||||||| |   | ||| |||||||||| |||||||||||||| ||   |||| ||  | |||||||||||||| ||||| | |  ||    
T  2499046 ttcaggataaaaattacaaagaatagtcaagataagatagaaaaatgatttattt-taccatatctcttgggtgcatcaaacatgatatttaagtagaat 2498948  T
Q  120 atgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||||||||| |||||||    
T  2498947 atgattaatatatcatatcacgtctctc 2498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 33134192 - 33134090
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || ||| |||| |||||||||||| ||||||| |||  |||| || || ||||| |||||| ||||||| ||| ||||||||    
T  33134192 gatagaaattacaaaggaaagtcaggataggataggaaaatggtttattt-tatcctatccctttggtgcattaaacataagatttaagcaggatatgat 33134094  T
Q  125 taat 128  Q
    ||||    
T  33134093 taat 33134090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 10306845 - 10306963
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactat--gatgcatcaaacatgagatttatgcatga 118  Q
    |||||||||||||||| | || |||||| ||||  ||||||||||| |||||||   |||| || ||||  |||||||||||||||||||||||| || |    
T  10306845 tcaagataaaaattacgaaggaaaatcatgatataataggaaaatggtttattt---tattctctctatttgatgcatcaaacatgagatttatgaataa 10306941  T
Q  119 tatgattaatatatcatatcat 140  Q
    |||||||||||||| |||||||    
T  10306942 tatgattaatatattatatcat 10306963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 37347068 - 37347179
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || |||||| |||| ||||| |||||| ||||||| |||  |||| || || |||||||||||| ||||||| ||| ||||||||    
T  37347068 gatagaaattacaaaggaaaatcaggataggatagaaaaatggtttattt-tatcatatccctttggtgcatcaaacataagatttaagcaagatatgat 37347166  T
Q  125 taatatatcatat 137  Q
    |||| ||||||||    
T  37347167 taatgtatcatat 37347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 49549614 - 49549507
Alignment:
Q  30 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 129  Q
    ||||||||| || || ||| |||| |||||| ||||||||||||| |||  |||| || || ||||||||| |||||||||| ||| ||||||||||||     
T  49549614 aaattacaaaggaaagtcaggatatgatagggaaatgatttattt-tatcctatccctttggtgcatcaaatatgagatttaagcaggatatgattaatg 49549516  T
Q  130 tatcatatc 138  Q
    |||||||||    
T  49549515 tatcatatc 49549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 48527426 - 48527377
Alignment:
Q  89 tgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatc 138  Q
    ||||||||||||||||| ||||| ||| |||||||| |||||||||||||    
T  48527426 tgatgcatcaaacatgaaatttaagcaagatatgataaatatatcatatc 48527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 28622969 - 28623088
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||||||||||||| || || ||| |||| ||||| |||||  ||||||| |||  |||| || || |||||||||||||  |||||   | ||||||||    
T  28622969 gataaaaattacaaaggaaagtcaggataggatagaaaaatagtttattt-tattctatccctttggtgcatcaaacatggaatttaaataggatatgat 28623067  T
Q  125 taatatatcatatcatgtctc 145  Q
    |||| ||||||||||||||||    
T  28623068 taatgtatcatatcatgtctc 28623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 19910075 - 19909994
Alignment:
Q  55 gataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 137  Q
    ||||| |||||| ||||||| ||| ||||| || ||||||||||||||||| ||||| |||  |||| |||||| ||||||||    
T  19910075 gatagaaaaatggtttattt-tatcttatctctttgatgcatcaaacatgatatttaagcacaatataattaatgtatcatat 19909994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 37485711 - 37485585
Alignment:
Q  20 ttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgat 119  Q
    |||| |||| ||||||||| || || ||| |||| |||||||||||| ||||||| |||  ||||  | || |||||||||||||||||||| ||| |||    
T  37485711 ttcatgatagaaattacaaaggaaagtcaggatatgataggaaaatggtttattt-tatcatatctttttggtgcatcaaacatgagatttaagcaggat 37485613  T
Q  120 atgattaatatatcatatcatgtctctc 147  Q
    ||||||||||||| ||||| ||||||||    
T  37485612 atgattaatatattatatcttgtctctc 37485585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 40619752 - 40619873
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||| | || || ||| |||| ||||| |||||| ||||||| |||  |||| || || |||||||||||||||||||| ||| ||||||||    
T  40619752 gatagaaattacgaaggaaagtcaggatatgatagaaaaatggtttattt-tatcatatccctttggtgcatcaaacatgagatttaagcaggatatgat 40619850  T
Q  125 taatatatcatatcatgtctctc 147  Q
    |||| ||||||||| | ||||||    
T  40619851 taatgtatcatatcctatctctc 40619873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 19695545 - 19695490
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||||||||| | | |||||||||||| ||||||||| ||||||||    
T  19695545 tgcatcaaacatgagatttacgtaggatatgattaatgtatcatatcctgtctctc 19695490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 27338824 - 27338714
Alignment:
Q  27 taaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatta 126  Q
    |||||||||||| || || ||| |||| ||||| |||||| ||||||| |||  ||||| | |  |||||||||||||||||||| | | ||||||||||    
T  27338824 taaaaattacaaaggaaagtcaggataggatagaaaaatggtttattt-tatcatatcattttagtgcatcaaacatgagatttaagtaggatatgatta 27338726  T
Q  127 atatatcatatc 138  Q
    || |||||||||    
T  27338725 atgtatcatatc 27338714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 41595280 - 41595236
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcata 136  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||    
T  41595280 tgcatcaaacatgagatttaagcacgatatgattaatgtatcata 41595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 13996209 - 13996321
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || ||| |||| ||||| || ||||||||||| |||  | || || || |||||||||||||||||||| | | ||||| ||    
T  13996209 gatagaaattacaaaggaaagtcaggatatgatagaaacatgatttattt-tatcatgtccctttggtgcatcaaacatgagatttaaggaggatataat 13996307  T
Q  125 taatatatcatatc 138  Q
    |||| |||||||||    
T  13996308 taatgtatcatatc 13996321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 13349623 - 13349675
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtct 144  Q
    |||||||||||||||||||| | | ||||| |||||| ||||||||| |||||    
T  13349623 tgcatcaaacatgagatttaagtaggatataattaatgtatcatatcctgtct 13349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 23404596 - 23404473
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    |||||||| ||||||||| || || ||| |||| |||| | ||||| ||||||| |||  |||| || || |||||||||||||| ||||||||| ||||    
T  23404596 tcaagatataaattacaaaggaaagtcaggatatgatatggaaatggtttattt-tatcctatctctttggtgcatcaaacatgaaatttatgcaggata 23404498  T
Q  121 tgattaatatatcatatcatgtctc 145  Q
    | |||||| ||||||||||||||||    
T  23404497 ttattaatgtatcatatcatgtctc 23404473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 29979453 - 29979562
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || ||||||  ||| |||||||||||| ||||||| |||  |||| || || ||||||||||||||||||||  |||||||||||    
T  29979453 gatagaaattacaaaggaaaatcataatatgataggaaaatggtttattt-tatcatatccctttggtgcatcaaacatgagatttaaacatgatatgat 29979551  T
Q  125 taatatatcat 135  Q
    |||| ||||||    
T  29979552 taatgtatcat 29979562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 10789479 - 10789600
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || |||||| ||||| ||| ||||||| ||||||| ||| ||||| || |  ||||||||| |||| ||||| |||  |||||||    
T  10789479 gatagaaattacaaaggaaaatcaggataaaataagaaaatggtttatttttatcttatctctctcgtgcatcaaatatgaaatttaagcagaatatgat 10789578  T
Q  125 taatatatcatatcatgtctct 146  Q
    |||| ||||||||  |||||||    
T  10789579 taatgtatcatattctgtctct 10789600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 9314907 - 9314804
Alignment:
Q  30 aaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaata 129  Q
    ||||||||| || || ||| |||| |||||||||||| |||||||  ||  ||||  | || |||||||||||||||||||| ||| ||||||||||||     
T  9314907 aaattacaaaggaaagtcaggataggataggaaaatggtttattt--atcctatccatttggtgcatcaaacatgagatttaagcaggatatgattaatg 9314810  T
Q  130 tatcat 135  Q
    ||||||    
T  9314809 tatcat 9314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 12255186 - 12255105
Alignment:
Q  55 gataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 137  Q
    |||||||||||| ||||||| |||   ||| || || |||||||||||||||||||| ||| |||||||||||| ||||||||    
T  12255186 gataggaaaatggtttattt-tatcccatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatat 12255105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 28115982 - 28116097
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || | | |||| |||||||||||| ||||||| ||| ||||||||  | ||||||||| |||||||||| |||| |||||||    
T  28115982 gatagaaattacaaaggaaagttaggataggataggaaaatggtttattt-tatcttatcacttaggtgcatcaaatatgagatttaagcataatatgat 28116080  T
Q  125 taatatatcatatcatg 141  Q
    |||| ||||||||||||    
T  28116081 taatgtatcatatcatg 28116097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 3767815 - 3767722
Alignment:
Q  51 ataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 145  Q
    |||||||||  ||||||||||||| |||  ||||||| || |||||||||||||| ||||| ||| |||||||||||| ||||||||||| ||||    
T  3767815 ataagatagagaaatgatttattt-tatcctatcactttggtgcatcaaacatgaaatttaagcaggatatgattaatgtatcatatcatatctc 3767722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 21342170 - 21342225
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||    
T  21342170 tgcatcaaacatgagatttaagcaggatatgattaatgtatcatatcctgtctctc 21342225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 34513810 - 34513926
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || ||| |||| ||||| |||||| ||||||| |||  ||||  | || |||||||||||||||||||| ||| ||||| ||    
T  34513810 gatagaaattacaaaggaaagtcaggatatgatagaaaaatggtttattt-tatcctatccatttggtgcatcaaacatgagatttaagcaggatataat 34513908  T
Q  125 taatatatcatatcatgt 142  Q
    |||| |||||||||||||    
T  34513909 taatgtatcatatcatgt 34513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 3692655 - 3692712
Alignment:
Q  80 ttatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatat 137  Q
    ||||| || ||||||||||||||||||||||| | |||||||||  ||||||||||||    
T  3692655 ttatctctttgatgcatcaaacatgagatttaagtatgatatgaacaatatatcatat 3692712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 45499228 - 45499345
Alignment:
Q  20 ttcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgat 119  Q
    |||| |||| ||||||||| || || ||| |||| |||||  ||||| ||||||| |||  ||||| | || ||||||||||||| |||||| | |  ||    
T  45499228 ttcaggatataaattacaaaggaaagtcaggataggatagagaaatggtttattt-tatcctatcattttggtgcatcaaacatgtgatttaagaagaat 45499326  T
Q  120 atgattaatatatcatatc 138  Q
    |||||||||||||||||||    
T  45499327 atgattaatatatcatatc 45499345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 5787362 - 5787406
Alignment:
Q  30 aaattacaatggcaaatcacgataagataggaaaatgatttattt 74  Q
    ||||||||| || |||||| |||| ||||||||||||||||||||    
T  5787362 aaattacaaaggaaaatcatgataggataggaaaatgatttattt 5787406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 21748451 - 21748570
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || ||||||  ||| |||||||||||| || |||| |||  ||||| | || |||||||||||||||||||| |||  |||||||    
T  21748451 gatagaaattacaaaggaaaatcataataggataggaaaatggttaattt-tatcatatcattttggtgcatcaaacatgagatttaagcagaatatgat 21748549  T
Q  125 taatatatcatatcatgtctc 145  Q
    |||| ||||||||||||||||    
T  21748550 taatgtatcatatcatgtctc 21748570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 28457860 - 28457954
Alignment:
Q  50 gataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 145  Q
    |||||||||| |||||| ||||||| |||  ||||||| || |||||||||||  ||||||| ||| |||||||||||| ||||||||| ||||||    
T  28457860 gataagatagaaaaatggtttattt-tatcatatcactttggtgcatcaaacacaagatttaagcaggatatgattaatgtatcatatcctgtctc 28457954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 21495124 - 21495072
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 145  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  21495124 tgcatcaaacatgagatttaa-caagatatgattaatatatcatatcatgtctc 21495072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 40701149 - 40701200
Alignment:
Q  93 gcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtct 144  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| |||||    
T  40701149 gcatcaaacatgagatttaagcaggatatgattaatgtatcatatcctgtct 40701200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 30271847 - 30271878
Alignment:
Q  115 atgatatgattaatatatcatatcatgtctct 146  Q
    ||||||||||||||||||||||||||||||||    
T  30271847 atgatatgattaatatatcatatcatgtctct 30271878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 7818541 - 7818586
Alignment:
Q  95 atcaaacatgagatttatgcatgatatgattaatatatcatatcat 140  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||    
T  7818541 atcaaacatgagatttaagcagaatatgattaatgtatcatatcat 7818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 32962161 - 32962042
Alignment:
Q  25 gataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgat 124  Q
    |||| ||||||||| || || ||| |||| |||||||||||  ||||||| |||  |||| |  || |||||||||||||||||||| ||| ||||||||    
T  32962161 gatagaaattacaaaggaaagtcaggatatgataggaaaatagtttattt-tattctatcccattggtgcatcaaacatgagatttaagcaggatatgat 32962063  T
Q  125 taatatatcatatcatgtctc 145  Q
    |||| ||||||||||| ||||    
T  32962062 taatgtatcatatcatatctc 32962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 37246204 - 37246151
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctc 145  Q
    |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||    
T  37246204 tgcatcaaacatgatatttaagcaggatatgattaatgtatcatatcatgtctc 37246151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 15268730 - 15268612
Alignment:
Q  26 ataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgatatgatt 125  Q
    ||||||||||||| || || ||  |||| |||||||||||| ||||||| |||  ||||  | || || ||||||||||||||||  ||| |||||||||    
T  15268730 ataaaaattacaaaggaaagtcgggataggataggaaaatggtttattt-tatcctatccatttgttgtatcaaacatgagatttcagcaggatatgatt 15268632  T
Q  126 aatatatcatatcatgtctc 145  Q
    ||| ||||||||| ||||||    
T  15268631 aatgtatcatatcctgtctc 15268612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 16295377 - 16295322
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||||    
T  16295377 tgcatcaaacatgatatttaagcaggatatgattaatgtatcatattatgtctctc 16295322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 16303079 - 16303024
Alignment:
Q  92 tgcatcaaacatgagatttatgcatgatatgattaatatatcatatcatgtctctc 147  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||||    
T  16303079 tgcatcaaacatgatatttaagcaggatatgattaatgtatcatattatgtctctc 16303024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 8491071 - 8491193
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    ||||||||||||||||||  |||| | |   |||||||| |||||||||||||| |||  |||| || |||| ||||||| |||| |||||  || ||||    
T  8491071 tcaagataaaaattacaaatgcaagtgagagtaagatag-aaaatgatttattt-tatcatatctctttgatacatcaaatatgatatttaaacaagata 8491168  T
Q  121 tgattaatatatcatatcatgtctc 145  Q
    ||||||||||| ||||| |||||||    
T  8491169 tgattaatataccatattatgtctc 8491193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 16456605 - 16456490
Alignment:
Q  21 tcaagataaaaattacaatggcaaatcacgataagataggaaaatgatttatttctatattatcactatgatgcatcaaacatgagatttatgcatgata 120  Q
    ||||||||| ||||||||  |||||||| |||| ||||  |||||  ||||||| ||| ||||| || || |||||||||||||| ||||| | |  |||    
T  16456605 tcaagataagaattacaaaagcaaatcaggataggataaaaaaatagtttattt-tatcttatctctttggtgcatcaaacatgatatttaagtagaata 16456507  T
Q  121 tgattaatatatcatat 137  Q
    ||||| |||||||||||    
T  16456506 tgattgatatatcatat 16456490  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 11657028 - 11657071
Alignment:
Q  94 catcaaacatgagatttatgcatgatatgattaatatatcatat 137  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||    
T  11657028 catcaaacatgagatttaagcaggatatgattaatgtatcatat 11657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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