View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_24 (Length: 231)
Name: NF4087_low_24
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_24 |
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| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: scaffold0433 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 1838 - 1636
Alignment:
| Q |
19 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1838 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
1739 |
T |
|
| Q |
119 |
cactgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagtat |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1738 |
caccgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagttt |
1639 |
T |
|
| Q |
219 |
tat |
221 |
Q |
| |
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||| |
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|
| T |
1638 |
tat |
1636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 3858839 - 3859041
Alignment:
| Q |
19 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3858839 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
3858938 |
T |
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| Q |
119 |
cactgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagtat |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3858939 |
caccgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagttt |
3859038 |
T |
|
| Q |
219 |
tat |
221 |
Q |
| |
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||| |
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| T |
3859039 |
tat |
3859041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 3867596 - 3867798
Alignment:
| Q |
19 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3867596 |
tcttctaaatcaaaattttaaaaatctattgtattgaaatgtagtaaagtcttcttcaataaaattaatgtactaaagtagctagtttcattttacattt |
3867695 |
T |
|
| Q |
119 |
cactgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagtat |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
3867696 |
caccgggttgaattcaactactatcactaaatgaagggaaactgcatattagtttcgttattcaattacataatctaatattgttctatttttgcagttt |
3867795 |
T |
|
| Q |
219 |
tat |
221 |
Q |
| |
|
||| |
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|
| T |
3867796 |
tat |
3867798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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