View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4087_low_3 (Length: 727)

Name: NF4087_low_3
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4087_low_3
NF4087_low_3
[»] chr4 (8 HSPs)
chr4 (4-434)||(30941349-30941780)
chr4 (610-700)||(30941155-30941245)
chr4 (207-331)||(54164595-54164720)
chr4 (207-324)||(7513529-7513647)
chr4 (554-591)||(30941244-30941281)
chr4 (213-315)||(17431105-17431208)
chr4 (207-312)||(54164468-54164574)
chr4 (204-252)||(32185280-32185329)
[»] chr1 (13 HSPs)
chr1 (202-446)||(30748955-30749199)
chr1 (202-446)||(30770406-30770650)
chr1 (207-446)||(22679339-22679578)
chr1 (207-321)||(14760013-14760127)
chr1 (202-446)||(22679341-22679585)
chr1 (289-446)||(30746777-30746932)
chr1 (289-446)||(30768228-30768383)
chr1 (259-331)||(51941997-51942069)
chr1 (318-376)||(39255523-39255581)
chr1 (210-331)||(13765561-13765683)
chr1 (207-331)||(16706337-16706462)
chr1 (210-312)||(32800272-32800375)
chr1 (320-362)||(18244768-18244810)
[»] chr7 (12 HSPs)
chr7 (207-446)||(7760610-7760849)
chr7 (208-331)||(31172304-31172428)
chr7 (207-312)||(12821181-12821286)
chr7 (207-312)||(31198446-31198551)
chr7 (290-363)||(15329944-15330017)
chr7 (208-315)||(31198302-31198409)
chr7 (201-312)||(6036544-6036656)
chr7 (342-446)||(23797193-23797296)
chr7 (202-312)||(19105403-19105513)
chr7 (285-323)||(8105166-8105204)
chr7 (199-279)||(3555359-3555440)
chr7 (208-312)||(7760745-7760850)
[»] chr8 (9 HSPs)
chr8 (200-408)||(5879870-5880078)
chr8 (200-312)||(10070007-10070120)
chr8 (202-312)||(14148393-14148503)
chr8 (200-312)||(8791855-8791968)
chr8 (201-331)||(33892032-33892163)
chr8 (207-301)||(31212443-31212538)
chr8 (360-446)||(9861572-9861657)
chr8 (204-312)||(6906421-6906530)
chr8 (243-312)||(8791749-8791818)
[»] chr5 (13 HSPs)
chr5 (203-446)||(22297766-22298020)
chr5 (205-312)||(22297762-22297870)
chr5 (201-329)||(6843078-6843207)
chr5 (360-446)||(6843086-6843171)
chr5 (207-331)||(17047984-17048108)
chr5 (207-312)||(13657697-13657803)
chr5 (289-346)||(2344578-2344635)
chr5 (207-315)||(8086682-8086791)
chr5 (207-316)||(38900225-38900334)
chr5 (286-331)||(13657631-13657676)
chr5 (207-331)||(25905960-25906085)
chr5 (200-312)||(25906106-25906218)
chr5 (207-271)||(29673293-29673358)
[»] chr2 (14 HSPs)
chr2 (201-312)||(4921311-4921423)
chr2 (207-331)||(32483648-32483773)
chr2 (203-324)||(16127916-16128038)
chr2 (207-340)||(37897577-37897711)
chr2 (208-312)||(981065-981169)
chr2 (216-312)||(35926736-35926832)
chr2 (203-312)||(16333297-16333407)
chr2 (207-331)||(980921-981044)
chr2 (206-312)||(40152700-40152806)
chr2 (260-330)||(25330684-25330754)
chr2 (230-327)||(35926857-35926955)
chr2 (286-331)||(12874762-12874807)
chr2 (208-352)||(27847860-27848005)
chr2 (207-331)||(32945614-32945738)
[»] chr6 (7 HSPs)
chr6 (207-376)||(12289982-12290152)
chr6 (198-312)||(34637572-34637687)
chr6 (200-312)||(13340591-13340704)
chr6 (202-268)||(10284213-10284277)
chr6 (207-312)||(30519683-30519788)
chr6 (207-279)||(403309-403381)
chr6 (207-331)||(34637427-34637551)
[»] chr3 (7 HSPs)
chr3 (243-443)||(44094191-44094391)
chr3 (207-314)||(32618932-32619040)
chr3 (207-314)||(43907865-43907972)
chr3 (208-312)||(4475108-4475212)
chr3 (360-460)||(32618953-32619052)
chr3 (199-331)||(4304137-4304270)
chr3 (260-329)||(10821886-10821955)
[»] scaffold0025 (1 HSPs)
scaffold0025 (207-312)||(63973-64079)
[»] scaffold0328 (1 HSPs)
scaffold0328 (286-331)||(11579-11624)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 4 - 434
Target Start/End: Complemental strand, 30941780 - 30941349
Alignment:
Q  4 tagtagacattttcttgtgtgtgtgttgatgaataatgagattgagtggtttggtttttcttttaaatagtaaataataaagccaagaaaaatggaggtg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941780 tagtagacattttcttgtgtgtgtgttgatgaataatgagattgagtggtttggtttttcttttaaatagtaaataataaagccaagaaaaatggaggtg 30941681  T
Q  104 aaaaatgtgaaagg-aatagaaggaggagagattgaaggaagagatggagtgggtatatatggtgatctgagtagacattttatgggccatattagtttt 202  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941680 aaaaatgtgaaaggtaatagaaggaggagagattgaaggaagagatggagtgggtatatatggtgatctgagtagacattttatgggccatattagtttt 30941581  T
Q  203 tagagttaaataagtaaataatccctctaaatatactaactttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatc 302  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  30941580 tagagttaaataagtaaataatctctctaaatatactaactttgattttagtcttcctaaaatatttatgaggttttatgttcctctaaaaattttcatc 30941481  T
Q  303 tatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagacta 402  Q
    ||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||| ||||||||    
T  30941480 tataaaattaatctttgctctacattaagaacatggactaattttatagataaaagtttttagatggatcaaaagactaaggaatattctagaaagacta 30941381  T
Q  403 aaatcatatttttgatatatttagagggacta 434  Q
    |||||||| ||||  |||||||||| ||||||    
T  30941380 aaatcatacttttagtatatttagatggacta 30941349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 610 - 700
Target Start/End: Complemental strand, 30941245 - 30941155
Alignment:
Q  610 ggcatgtttattgcaagtttctatgtgaaaaataaaacgtttttcttacaataattggttttaaaaggctttatcggtttgttatagattt 700  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30941245 ggcatgtttattacaagtttctatgtgaaaaataaaacgtttttcttacaataattggttttaaaaggctttatcggtttgttatagattt 30941155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 54164720 - 54164595
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| || | |||||||||| ||| |||||||||| |||   |||||||||||| |||||||| || ||||||||| ||||||| |||    
T  54164720 gttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaatttttcatttat 54164621  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||||| ||  | ||||||||||||    
T  54164620 gaaattagtcactgctctacattgag 54164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 7513529 - 7513647
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||||   ||||||||||||| ||| ||| ||||||||   | |||||||||||| ||| |||  |||| ||||||| ||||||| |||    
T  7513529 gttaaataagtaaatagctcctctaaatataccaacatttaattttaattaccttaaaatattttttaggcttttggttcatctaaaatttttcatttat 7513628  T
Q  306 gaaattaatcttttctcta 324  Q
    ||||||| ||||| |||||    
T  7513629 gaaattagtctttactcta 7513647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 591
Target Start/End: Complemental strand, 30941281 - 30941244
Alignment:
Q  554 gattatacaaattatcaaagatatgctataatgttagg 591  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30941281 gattatacaaattatcaaagatatgctataatgttagg 30941244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 17431208 - 17431105
Alignment:
Q  213 taagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaatt 311  Q
    |||||||||  ||| ||||||||||  ||| |||||||||| ||  |||||||||||||| ||| |||  || |||| ||||||||||||| ||||||||    
T  17431208 taagtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcatccatgaaatt 17431109  T
Q  312 aatc 315  Q
    ||||    
T  17431108 aatc 17431105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 54164468 - 54164574
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| ||  ||||||||||| ||| |||||||||| || || |||||||| ||| ||| |||  || | ||||||| ||||||| |||    
T  54164468 gttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaaaatttttcatttat 54164567  T
Q  306 gaaatta 312  Q
    |||||||    
T  54164568 gaaatta 54164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 32185280 - 32185329
Alignment:
Q  204 agagttaaataagtaaataatccctctaaatatactaac-tttgatttta 252  Q
    |||||||||| |||||||| ||||||||||||||| ||| ||||||||||    
T  32185280 agagttaaatgagtaaatagtccctctaaatataccaacatttgatttta 32185329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 202 - 446
Target Start/End: Complemental strand, 30749199 - 30748955
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttca 300  Q
    |||| |||||||| |||||||||||  |||||||||  ||| ||||||||||||    ||||||||||||| | |||||  |||||||||||| ||||||    
T  30749199 ttagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaatttttca 30749100  T
Q  301 tctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagac 400  Q
    || || |||||||||  | ||||||||||||||||||||||||||| || ||| |||  ||||  | |||||||||  |||| ||||||| ||    |||    
T  30749099 tccataaaattaatccctgctctacattgagaacatggactaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggac 30749000  T
Q  401 taaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    |||||||| || |||| |||||||||  |||| |||||||||||||    
T  30748999 taaaatcaaatatttg-tatatttaggaggaccatttacttattta 30748955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 202 - 446
Target Start/End: Complemental strand, 30770650 - 30770406
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttca 300  Q
    |||| |||||||| |||||||||||  |||||||||  ||| ||||||||||||    ||||||||||||| | |||||  |||||||||||| ||||||    
T  30770650 ttagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaatttttca 30770551  T
Q  301 tctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagac 400  Q
    || || |||||||||  | ||||||||||||||||||||||||||| || ||| |||  ||||  | |||||||||  |||| ||||||| ||    |||    
T  30770550 tccataaaattaatccctgctctacattgagaacatggactaatttcatagatgaaaaattttgaagggaccaaaagcctaaagaatattttagggggac 30770451  T
Q  401 taaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    |||||||| || |||| |||||||||  |||| |||||||||||||    
T  30770450 taaaatcaaatatttg-tatatttaggaggaccatttacttattta 30770406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 22679339 - 22679578
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaactt-tgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| ||||||| ||||||  ||| | |||||||||||  ||||||||||  || ||||||| ||| |||| ||||| ||||||| ||    
T  22679339 gttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaaatatcctttaggttttttgtccctccaaaaaatttcatccat 22679438  T
Q  306 gaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagactaaaa 405  Q
    ||||||| ||  | |||||||||||||||| |||||| ||| |||||| |||   |||||| |||||||||| ||||  |||||| || |  ||||||||    
T  22679439 gaaattagtccctgctctacattgagaacagggactagtttaatggatgaaaaaatttagagggaccaaaaacctaacaaatattttagagggactaaaa 22679538  T
Q  406 tcatatttttgatatatttagagggactatttacttattta 446  Q
    ||| | | ||| ||||||||| ||||   ||||||||||||    
T  22679539 tca-aatgttggtatatttagggggatcgtttacttattta 22679578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 14760127 - 14760013
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||| |||||  ||||||||| ||| |||||||||||||  |||||||||||||| ||| ||| || ||| |||||| |||||||||||    
T  14760127 gttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttt-tggtcccctaaaatttttcatctat 14760029  T
Q  306 gaaattaatcttttct 321  Q
    ||||||| || |||||    
T  14760028 gaaattagtcctttct 14760013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 202 - 446
Target Start/End: Complemental strand, 22679585 - 22679341
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttca 300  Q
    |||||||||||||||||||  ||||| |||||||||| ||| |||||||||| ||   ||||||||||| | |||||||  || ||||||||  ||||||    
T  22679585 ttagagttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaattttttca 22679486  T
Q  301 tctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagac 400  Q
    || || ||| || ||  |  |||  ||  ||| || |||||||||| |||||| ||| ||||| || |||| ||||| |||| | ||||| ||    ||     
T  22679485 tccattaaactagtccctgttctcaatgtagagcagggactaatttcatggatgaaattttttggagggacaaaaaacctaaaggatattttagggggat 22679386  T
Q  401 taaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  22679385 taaaatcatatgtt-gatatattcagagggactatttacttattta 22679341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 289 - 446
Target Start/End: Complemental strand, 30746932 - 30746777
Alignment:
Q  289 taaaaattttcatctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaata 388  Q
    |||||||||||||| ||||||||| ||  | |||||||||||||||| |||||||||| |||||| ||| | ||| || |||| ||||| |||| |||||    
T  30746932 taaaaattttcatccatgaaattagtccatgctctacattgagaacagggactaatttcatggatgaaa-tatttggagggacaaaaaacctaaagaata 30746834  T
Q  389 ttctaaaaagactaaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    || |||  | |||||||||| || || | ||||||||  ||||| |||||||||||||    
T  30746833 ttttaaggaaactaaaatcaaatattag-tatatttaaggggaccatttacttattta 30746777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 289 - 446
Target Start/End: Complemental strand, 30768383 - 30768228
Alignment:
Q  289 taaaaattttcatctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaata 388  Q
    |||||||||||||| ||||||||| ||  | |||||||||||||||| |||||||||| |||||| ||| | ||| || |||| ||||| |||| |||||    
T  30768383 taaaaattttcatccatgaaattagtccatgctctacattgagaacagggactaatttcatggatgaaa-tatttggagggacaaaaaacctaaagaata 30768285  T
Q  389 ttctaaaaagactaaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    || |||  | |||||||||| || || | ||||||||  ||||| |||||||||||||    
T  30768284 ttttaaggaaactaaaatcaaatattag-tatatttaaggggaccatttacttattta 30768228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 51942069 - 51941997
Alignment:
Q  259 ctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaattaatcttttctctacattgag 331  Q
    ||||||||||| | |||||||  |||||||||||| |||||||||||||||||||||  | ||||||||||||    
T  51942069 ctaaaatatttcttaggtttttggttcctctaaaatttttcatctatgaaattaatccctgctctacattgag 51941997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 39255581 - 39255523
Alignment:
Q  318 ttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| | |||||||    
T  39255581 ttctctacattgagaacatggactaattttatggataattttttttagaggaaccaaaa 39255523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 13765561 - 13765683
Alignment:
Q  210 aaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaa 308  Q
    |||||||||||||||| | |||||||||| ||| |||||||||| ||  | ||||||||| || |||||||  || ||| ||| | ||||||| ||||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccctttaatatttttcatttatgaa 13765660  T
Q  309 attaatcttttctctacattgag 331  Q
    |||| ||  | ||||||||||||    
T  13765661 attagtccctactctacattgag 13765683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 16706337 - 16706462
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||| || ||||| ||||||||||||||| ||| |||||||||| ||   ||||||| || || ||| |||  || | ||||||| |||||||||||    
T  16706337 gttaaatgagaaaatattccctctaaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaaaatttttcatctat 16706436  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||||| ||| |  |||||||||||    
T  16706437 gaaattagtctctgttctacattgag 16706462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 32800375 - 32800272
Alignment:
Q  210 aaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaa 308  Q
    ||||||||||||| |||| |||||||||  ||  ||||||||||||| || ||||||||| |  |||||||  || ||||||||| |||| || ||||||    
T  32800375 aaataagtaaatagtcccactaaatatatcaatatttgattttaatcctcataaaatattatgtaggtttttggtccctctaaaattttttatgtatgaa 32800276  T
Q  309 atta 312  Q
    ||||    
T  32800275 atta 32800272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 18244768 - 18244810
Alignment:
Q  320 ctctacattgagaacatggactaattttatggataaaagtttt 362  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||    
T  18244768 ctctacattgagaacatggactaatttcatggatgaaaatttt 18244810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 7760610 - 7760849
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaactt-tgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||||||| ||||||||||| | | | |||||||| ||  ||||||||||| || ||| |||  || |||| |||| | |||||| ||    
T  7760610 gttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaattgttcatccat 7760709  T
Q  306 gaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagactaaaa 405  Q
    |||||||  || | |||||||||||||| | |||||||||| |||||| ||| ||||| || |||||||||  ||||| |||||| || |  ||||||||    
T  7760710 gaaattagcctctgctctacattgagaatagggactaatttcatggatgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaa 7760809  T
Q  406 tcatatttttgatatatttagagggactatttacttattta 446  Q
    ||| | | ||| ||||||||| || ||||||||||||||||    
T  7760810 tca-aatgttggtatatttaggggaactatttacttattta 7760849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 31172428 - 31172304
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    |||||||||||||| |||||| ||||||||| ||| ||||||||||||| ||||||||||||||| |||||||  || ||||||||||||||||||||      
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaattttcatctaga 31172329  T
Q  307 aaattaatcttttctctacattgag 331  Q
    ||||||  | || ||||||||||||    
T  31172328 aaattagaccttgctctacattgag 31172304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 12821181 - 12821286
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||  ||||  ||||||||| ||| |||||||||||||  |||||||||||||| ||| |||  |||||||| |||||||||||||||    
T  12821181 gttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcctct-aaaattttcatctat 12821279  T
Q  306 gaaatta 312  Q
    |||||||    
T  12821280 gaaatta 12821286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 31198551 - 31198446
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||| |  ||||||||||||| | ||| ||| ||  ||||||||| |||||||||||    
T  31198551 gttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatatttcttaggcttt-tggccctctaaaatttttcatctat 31198453  T
Q  306 gaaatta 312  Q
    |||||||    
T  31198452 gaaatta 31198446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 15329944 - 15330017
Alignment:
Q  290 aaaaattttcatctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagttttt 363  Q
    ||||||||||||||||||||| | ||  | ||||||||||||||||||||||||||| |||||| ||| |||||    
T  15329944 aaaaattttcatctatgaaataagtccatactctacattgagaacatggactaatttcatggatgaaatttttt 15330017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 31198302 - 31198409
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    ||||||||||||||| | || |||||||||| ||| |||||||||| || | ||||||||||||| ||||| |   | ||||||||| ||||||| ||||    
T  31198302 ttaaataagtaaatagttcc-ctaaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaaaatttttcatttatg 31198400  T
Q  307 aaattaatc 315  Q
    |||||||||    
T  31198401 aaattaatc 31198409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 6036544 - 6036656
Alignment:
Q  201 tttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttc 299  Q
    |||||||||||||||||||||| | || |||||||||  ||| |||||||||| ||  | ||||||| |||| |||||||  |   |||||||| |||||    
T  6036544 tttagagttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggtttttggcctctctaaaatttttc 6036643  T
Q  300 atctatgaaatta 312  Q
    || ||||||||||    
T  6036644 atttatgaaatta 6036656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 446
Target Start/End: Original strand, 23797193 - 23797296
Alignment:
Q  342 aattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagactaaaatcatatttttgatatatttagagggactatttactt 441  Q
    ||||| ||||||||||  ||||||| |||||||||| ||||| |||||| || |  ||||||||||| | | ||||||||||||| |  ||||||||| |    
T  23797193 aatttaatggataaaaagttttagagggaccaaaaatctaagaaatattttagagggactaaaatca-aatgttgatatatttagggaaactatttacat 23797291  T
Q  442 attta 446  Q
    |||||    
T  23797292 attta 23797296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 19105513 - 19105403
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttca 300  Q
    |||| |||||||||||||||| |||| |||||||||| ||| |||||||||| ||  | |||| |||| || ||| |||  || ||||| ||||||||||    
T  19105513 ttagggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctct-aaaattttca 19105415  T
Q  301 tctatgaaatta 312  Q
    | ||||||||||    
T  19105414 tttatgaaatta 19105403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 8105204 - 8105166
Alignment:
Q  285 cctctaaaaattttcatctatgaaattaatcttttctct 323  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  8105204 cctctaaaaattttcatctatgaaattagtctttgctct 8105166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 3555359 - 3555440
Alignment:
Q  199 tttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggtttt 279  Q
    ||||||| |||||||||| ||||  |||| |||||||||| ||| |||||||||| ||  |||||||||||| | |||||||    
T  3555359 tttttagggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttaggtttt 3555440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 7760850 - 7760745
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    ||||||||||||||| | || |||||||||| ||| |||||||||| ||    |||||||||| | ||| |||  || |||| ||||||||||||| |||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcatccatg 7760751  T
Q  307 aaatta 312  Q
    ||||||    
T  7760750 aaatta 7760745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 408
Target Start/End: Original strand, 5879870 - 5880078
Alignment:
Q  200 ttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatttt 298  Q
    |||||| |||||||||||||||| || | |||||||||||||  |||||||||| |||| ||||||||||| | | | |||  || ||||||| | ||||    
T  5879870 ttttagggttaaataagtaaatagtctccctaaatatactaatatttgattttagtctttctaaaatatttcttaagctttg-gtccctctaacattttt 5879968  T
Q  299 catctatgaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaag 398  Q
    |||| ||||||||| ||| | |||||||  |||| |||| |||||||| ||||||||   ||||| || | || ||||| |||||||||||| ||||| |    
T  5879969 catccatgaaattagtctctactctacaacgagagcatgaactaatttcatggataatttttttttgaggaacaaaaaatctaaggaatattttaaaagg 5880068  T
Q  399 actaaaatca 408  Q
    || |||||||    
T  5880069 acaaaaatca 5880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 10070120 - 10070007
Alignment:
Q  200 ttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatttt 298  Q
    |||||| |||||||||| ||||| | || |||||||||| ||  ||| ||||||||| ||||||||||||||| |||||||  || ||||||||| ||||    
T  10070120 ttttagggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaattttt 10070021  T
Q  299 catctatgaaatta 312  Q
    ||||||||||||||    
T  10070020 catctatgaaatta 10070007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 14148393 - 14148503
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttca 300  Q
    |||| ||| ||||||||| |  |||| |||||||||  ||| |||||||||| || ||||||||||||| | |||||||  ||||| |||||||||||||    
T  14148393 ttagggtttaataagtaagtggtccccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggtttttagttcc-ctaaaaattttca 14148491  T
Q  301 tctatgaaatta 312  Q
    ||||||||||||    
T  14148492 tctatgaaatta 14148503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 8791968 - 8791855
Alignment:
Q  200 ttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatttt 298  Q
    |||||| |||||||||||||||| | |   ||||||||||||| ||||||||||||| || |||||||||| | ||||||| | | |||||| |  ||||    
T  8791968 ttttagggttaaataagtaaatagttctcttaaatatactaacatttgattttaatcctcataaaatatttcttaggttttttatccctctacatttttt 8791869  T
Q  299 catctatgaaatta 312  Q
     |||||||||||||    
T  8791868 tatctatgaaatta 8791855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 201 - 331
Target Start/End: Original strand, 33892032 - 33892163
Alignment:
Q  201 tttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttc 299  Q
    ||||| |||||||||||||||| | |   ||||||||| ||| |||||||||| ||  |  |||||||| || |||||||  || | |||||||||||||    
T  33892032 tttagggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttc 33892131  T
Q  300 atctatgaaattaatcttttctctacattgag 331  Q
    ||||||||||||| ||  | ||||||||||||    
T  33892132 atctatgaaattagtccatactctacattgag 33892163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 31212538 - 31212443
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcat 301  Q
    |||||||||||||||| || | |||||||||| ||| |||||||||| ||  | ||||||||| || |||||||   ||||||||||| |||||||    
T  31212538 gttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttgtttcctctaaaatttttcat 31212443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 9861657 - 9861572
Alignment:
Q  360 ttttagatggaccaaaaagctaaggaatattctaaaaagactaaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    ||||||| |||||||||  |||| ||||||| || |  ||||||||||| || || |||||||||||  ||||||||||||||||||    
T  9861657 ttttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgtt-gatatatttaggaggactatttacttattta 9861572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 6906530 - 6906421
Alignment:
Q  204 agagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatc 302  Q
    |||||||||||||||||   |||| |||||||||| ||| |||||||||| ||  | |||||||||||| ||| |||   | |||| |||||||||||||    
T  6906530 agagttaaataagtaaacggtccccctaaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctccaaaaattttcatc 6906431  T
Q  303 tatgaaatta 312  Q
     || ||||||    
T  6906430 cattaaatta 6906421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 8791749 - 8791818
Alignment:
Q  243 tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaatta 312  Q
    |||||||||| ||  || ||||||||| | |||||||  || ||||||||| ||||||||||||||||||    
T  8791749 tttgattttactcaccccaaaatatttgttaggtttttggtccctctaaaatttttcatctatgaaatta 8791818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 203 - 446
Target Start/End: Complemental strand, 22298020 - 22297766
Alignment:
Q  203 tagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcat 301  Q
    |||||||||||||||||||  |||| |||||||||||||| |||||||||| ||  | |||||||||||| | |||||  || ||||||||| |||||||    
T  22298020 tagagttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaatttttcat 22297921  T
Q  302 ctatgaaattaatcttttctctacattgagaa-----------catggactaattttatggataaaagtttttagatggaccaaaaagctaaggaatatt 390  Q
     |||||||||| |||   |||||||||||| |           || |||||||||| || ||| | |  ||||| | |||||||||| ||||  ||||||    
T  22297920 ttatgaaattagtctcagctctacattgagtattacaatagcgcagggactaatttcatagatgagaaattttaaagggaccaaaaacctaaaaaatatt 22297821  T
Q  391 ctaaaaagactaaaatcatatttttgatatatttagagggactatttacttattta 446  Q
     || |  ||||||||||| | | |||||||||||||||||||||||||||||||||    
T  22297820 ttagagggactaaaatca-aatgttgatatatttagagggactatttacttattta 22297766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 22297762 - 22297870
Alignment:
Q  205 gagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatct 303  Q
    |||||||||||||||||| ||||||||||||||  ||| |||||||||| ||   ||||||||||||| |||||||  || ||| ||||| || ||||||    
T  22297762 gagttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaatttctcatct 22297861  T
Q  304 atgaaatta 312  Q
    |||||||||    
T  22297862 atgaaatta 22297870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 6843078 - 6843207
Alignment:
Q  201 tttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttc 299  Q
    ||||| ||||||||| |||||| || || ||||||||| ||| |||||||||| || ||||| ||||||  | || ||||  || ||||||||| |||||    
T  6843078 tttagggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttc 6843177  T
Q  300 atctatgaaattaatcttttctctacattg 329  Q
    ||||||||||||||||  | ||||||||||    
T  6843178 atctatgaaattaatccctgctctacattg 6843207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 6843171 - 6843086
Alignment:
Q  360 ttttagatggaccaaaaagctaaggaatattctaaaaagactaaaatcatatttttgatatatttagagggactatttacttattta 446  Q
    ||||||| |||||||||| |||||||||||||||  | ||||||||||| || |||| |||||||| || ||||||||| |||||||    
T  6843171 ttttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttg-tatatttaaagagactatttatttattta 6843086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 17048108 - 17047984
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||| ||| |||||  ||||||||| ||| |||||||| | ||  ||||||| |||||| ||| |||  ||||||||||||| ||||||||||    
T  17048108 gttaaataagtgaatgatccccttaaatataccaacatttgattt-agtccccctaaaagattttttaggcttttggttcctctaaaaaatttcatctat 17048010  T
Q  306 gaaattaatcttttctctacattgag 331  Q
     |||||| ||| | ||||||||||||    
T  17048009 taaattagtctctgctctacattgag 17047984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 13657803 - 13657697
Alignment:
Q  207 gttaaataagtaaataatccctct-aaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcc-tctaaaaattttcatct 303  Q
    |||||||||||||||| ||| ||| |||||||||||| |||||||||| | ||||||||||||| ||  || ||| |||||| ||||||||||||||| |    
T  13657803 gttaaataagtaaatagtcc-tctgaaatatactaacatttgattttagttttcctaaaatattattttggcttt-tgttccctctaaaaattttcatgt 13657706  T
Q  304 atgaaatta 312  Q
    |||||||||    
T  13657705 atgaaatta 13657697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 2344635 - 2344578
Alignment:
Q  289 taaaaattttcatctatgaaattaatcttttctctacattgagaacatggactaattt 346  Q
    ||||| |||| ||| || |||||||||| | |||||||||||||||||||||||||||    
T  2344635 taaaattttttatccattaaattaatctctgctctacattgagaacatggactaattt 2344578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 315
Target Start/End: Complemental strand, 8086791 - 8086682
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||  ||| || || |||||| ||  |||||||||||||  |||||||||||||| || ||||  || |||| |||| |||||||| ||    
T  8086791 gttaaataagtaaaccatctctatatatatacaaatatttgattttaatccccctaaaatattttttagatttttggtccctcaaaaagttttcatccat 8086692  T
Q  306 gaaattaatc 315  Q
    ||||||||||    
T  8086691 gaaattaatc 8086682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 38900225 - 38900334
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaa-ctttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||  ||||||||||||||| ||  ||| |||||| || ||||||||||||||| | | |||  ||||| | ||||| ||||||  ||    
T  38900225 gttaaataagtaaattttccctctaaatataccaatattttattttagtc-tcctaaaatattttttatgcttttggttccaccaaaaaatttcattcat 38900323  T
Q  306 gaaattaatct 316  Q
    |||||||||||    
T  38900324 gaaattaatct 38900334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 13657631 - 13657676
Alignment:
Q  286 ctctaaaaattttcatctatgaaattaatcttttctctacattgag 331  Q
    ||||||||| ||||||||||||||||| | ||| ||||||||||||    
T  13657631 ctctaaaaaatttcatctatgaaattagtttttgctctacattgag 13657676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 25905960 - 25906085
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||| |||||  || |||||| ||| |||||||||| ||  |||||| |||||   ||| |||  || ||||||||| |||||||||||    
T  25905960 gttaaataagtaaatgatccccttatatataccaacatttgattttagtccccctaaagtatttcataggcttttggtccctctaaaatttttcatctat 25906059  T
Q  306 gaaattaatcttttctctacattgag 331  Q
     |||||| ||  | ||||||||||||    
T  25906060 aaaattagtccctgctctacattgag 25906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 25906218 - 25906106
Alignment:
Q  200 ttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatttt 298  Q
    |||||| ||||||||||||||||||||  |||||||||  ||| |||||||||| ||  ||| ||||||| || ||| |||  || ||||| ||| ||||    
T  25906218 ttttagggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccctct-aaattttt 25906120  T
Q  299 catctatgaaatta 312  Q
    ||| ||||||||||    
T  25906119 catttatgaaatta 25906106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 29673293 - 29673358
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatattttt 271  Q
    |||||||||||||||  ||||  ||||||||| ||| |||||||||| || |||||||||||||||    
T  29673293 gttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatattttt 29673358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 4921423 - 4921311
Alignment:
Q  201 tttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttc 299  Q
    ||||| ||||||||| |||||| || |||||||||||  ||| |||||||||||||  | |||||||||||| || |||| ||| |||||||||||||||    
T  4921423 tttagggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaattttc 4921324  T
Q  300 atctatgaaatta 312  Q
    |||||||||||||    
T  4921323 atctatgaaatta 4921311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 32483648 - 32483773
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||||| ||| |||||||||| || ||||||||||||   | |||||||||||| ||| |||  ||| |||||||||||||||| |||    
T  32483648 gttaaataagtaaataattcctttaaatatactgacatttgattttaattcccataaaatattttttaggcttttggtttctctaaaaattttcatttat 32483747  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||| | ||| | ||||||||||||    
T  32483748 gaaatcagtctctactctacattgag 32483773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 16127916 - 16128038
Alignment:
Q  203 tagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcat 301  Q
    |||||||||||||||||||| ||||  ||||||||| ||| ||| |||||| || |||||||||||| |  |||||||  || ||||||||| |||||||    
T  16127916 tagagttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaatttttcat 16128015  T
Q  302 ctatgaaattaatcttttctcta 324  Q
     |||||||||| ||| |||||||    
T  16128016 ttatgaaattagtctcttctcta 16128038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 37897577 - 37897711
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||| |||||  ||  ||||||| || ||| |||||||||| ||   ||||||||||  | |||||||| || |||||||||||||||||| ||    
T  37897577 gttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcatccat 37897676  T
Q  306 gaaattaatcttttctctacattgagaacatggac 340  Q
    ||||||| ||| | |||||||||||||||||||||    
T  37897677 gaaattagtctctgctctacattgagaacatggac 37897711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 981169 - 981065
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    ||||||||||||||| || |||||||||||| ||| |||||||||| ||  ||||||||||| || ||| |||  || ||||||||| ||||||| ||||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtcc-cctaaaatattctttaggcttttggtccctctaaaatttttcatttatg 981071  T
Q  307 aaatta 312  Q
    ||||||    
T  981070 aaatta 981065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 35926736 - 35926832
Alignment:
Q  216 gtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaatta 312  Q
    ||||||| |||| |||||||||| ||| |||||||||| ||| | |||||||||||| |||||||  ||||||||||||  |||||| ||||||||||    
T  35926736 gtaaatagtccc-ctaaatataccaacatttgattttagtctccataaaatattttttaggtttttagttcctctaaaacatttcatttatgaaatta 35926832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 16333407 - 16333297
Alignment:
Q  203 tagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcat 301  Q
    |||||||||||||||||| | ||||  ||||||||| ||| ||| ||||||||| ||||||| |||| |  | ||||| ||| ||||||||  |||||||    
T  16333407 tagagttaaataagtaaacagtccccttaaatataccaacatttaattttaatcctcctaaattattatgtacgttttttgtccctctaaattttttcat 16333308  T
Q  302 ctatgaaatta 312  Q
     ||||||||||    
T  16333307 ttatgaaatta 16333297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 980921 - 981044
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||| |||||| ||||||||  ||| |||||||||| || | ||||||||||| | ||| ||| || ||| ||||||| ||| ||||||    
T  980921 gttaaataagtaaatgatccctttaaatatatcaacatttgattttagtcct-ctaaaatatttcttaggcttt-tggtcccctaaaaaattttatctat 981018  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||||| ||| | ||| ||||||||    
T  981019 gaaattagtctctgctcaacattgag 981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 40152700 - 40152806
Alignment:
Q  206 agttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatcta 304  Q
    ||||||||||||||||  ||| | ||||||||| ||| ||| |||||| || ||||||||||||  | || |||| ||| |||| |||| ||||||||||    
T  40152700 agttaaataagtaaatggtcctt-taaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctccaaaatttttcatcta 40152798  T
Q  305 tgaaatta 312  Q
    ||||||||    
T  40152799 tgaaatta 40152806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 25330754 - 25330684
Alignment:
Q  260 taaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaattaatcttttctctacattga 330  Q
    |||||||||||| |||||||  || | ||||||||||||||| |||||||||| ||  | |||||||||||    
T  25330754 taaaatattttttaggtttttggtccttctaaaaattttcatttatgaaattagtccctgctctacattga 25330684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 35926955 - 35926857
Alignment:
Q  230 taaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaattaatcttttctctacat 327  Q
    ||||||||| ||| |||||||||| |||   |||||||||||| |||||||   || |||||||| |||| || |||||||||| ||||| ||||||||    
T  35926955 taaatataccaacatttgattttagtctcaataaaatattttttaggtttttgatttctctaaaattttttatttatgaaattagtctttgctctacat 35926857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 12874762 - 12874807
Alignment:
Q  286 ctctaaaaattttcatctatgaaattaatcttttctctacattgag 331  Q
    ||||||||| ||||||||||||||||| ||| | ||||||||||||    
T  12874762 ctctaaaaaatttcatctatgaaattagtctctgctctacattgag 12874807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 27847860 - 27848005
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    ||||||||||||||| ||||  ||||||||| ||| |||||||||| ||  | |||||||||  | | |||||  || ||| ||||| | |||||||||     
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccctttaaaattattcatctatt 27847959  T
Q  307 aaattaatcttttctctacattgagaacatggactaattttatgga 352  Q
    |||||| | | | |||||||||||||| |||||  |||||| ||||    
T  27847960 aaattagtttatgctctacattgagaatatggatgaattttttgga 27848005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 32945614 - 32945738
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||| ||||||| |||| | |||||||| ||| |||||||||| ||  | ||||||||| || || ||||   | ||||||||| |||| || |||    
T  32945614 gttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaaaattttt-atttat 32945712  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||||||||| | ||||||||||||    
T  32945713 gaaattaatctctactctacattgag 32945738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 12289982 - 12290152
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| || | |||||||||| ||| ||||||||||  || |||||||||||    |||||||   | |||  ||||||||||||| ||    
T  12289982 gttaaataagtaaatagtctccctaaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatcccttcaaaaattttcatccat 12290081  T
Q  306 gaaattaatcttttctctacattgagaacatggactaattttatggataaaagtttttagatggaccaaaa 376  Q
    ||||||||||    ||||| ||||||||||||||||||||| |||||| ||  |||||| | |||||||||    
T  12290082 gaaattaatccccgctctaaattgagaacatggactaatttcatggatgaatttttttaaagggaccaaaa 12290152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 34637687 - 34637572
Alignment:
Q  198 gtttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatt 296  Q
    |||||||| |||||||||||||||| || | |||||||||  ||| |||||||||| |   ||||||||||| ||||||||||  || ||||||||| ||    
T  34637687 gtttttagggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaattt 34637588  T
Q  297 ttcatctatgaaatta 312  Q
    ||||| || |||||||    
T  34637587 ttcatttaagaaatta 34637572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 13340704 - 13340591
Alignment:
Q  200 ttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaatttt 298  Q
    |||||| |||||||| | ||||| ||||  ||||||||||||| |||||||||| ||  | ||||||||| || |||||||  || |||||||||| |||    
T  13340704 ttttagggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaattt 13340605  T
Q  299 catctatgaaatta 312  Q
    ||| ||||||||||    
T  13340604 catttatgaaatta 13340591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 10284213 - 10284277
Alignment:
Q  202 ttagagttaaataagtaaataatccctctaaatatactaactttgattttaatcttcctaaaatatt 268  Q
    |||| |||||||||| ||||||||||||||||||||| ||| |  |||||| ||||| |||||||||    
T  10284213 ttagggttaaataagaaaataatccctctaaatataccaacat--attttagtcttcataaaatatt 10284277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 30519683 - 30519788
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||  ||  ||||||||||| ||| ||||||||||||||   ||||||||| || | |||||  || ||||||||| |||||||| ||    
T  30519683 gttaaataagtaaatggtcg-tctaaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcatccat 30519781  T
Q  306 gaaatta 312  Q
    |||||||    
T  30519782 gaaatta 30519788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 403309 - 403381
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaa-ctttgattttaatcttcctaaaatatttttgaggtttt 279  Q
    |||||||||||||||| |||||||||||| |||||  ||| ||||||||| | |||||||||| || |||||||    
T  403309 gttaaataagtaaatagtccctctaaataaactaatatttaattttaatcct-ctaaaatattctttaggtttt 403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 34637427 - 34637551
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| || |  ||||||||| ||| |||||||||| ||  ||||||||||| |||||  |||  || ||| ||||||  ||||| |||    
T  34637427 gttaaataagtaaatagtctccataaatataccaacatttgattttagtcc-cctaaaatattcttgagacttttggtccctttaaaaaaattcatttat 34637525  T
Q  306 gaaattaatcttttctctacattgag 331  Q
    ||||||| ||| | ||||||||||||    
T  34637526 gaaattagtctatgctctacattgag 34637551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 243 - 443
Target Start/End: Original strand, 44094191 - 44094391
Alignment:
Q  243 tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaattaatcttttctctacattgagaa-catggact 341  Q
    ||||||||||||| | ||||||||||| | ||| |||  || ||| |||||  ||| ||  ||||||||| ||  | |||||||||||||| ||||||||    
T  44094191 tttgattttaatccttctaaaatatttcttaggcttttggtccctttaaaatattttattcatgaaattagtccctactctacattgagaaacatggact 44094290  T
Q  342 aattttatggataaaagtttttagatggaccaaaaagctaaggaatattctaaaaagactaaaatcatatttttgatatatttagagggactatttactt 441  Q
    ||||| |||||||||| ||||| || |||||||||  ||||| |||||| | |  |||||||||||| | | ||||||||||||  ||||| |||| |||    
T  44094291 aatttcatggataaaattttttggagggaccaaaaccctaagaaatattttcaggagactaaaatca-aatgttgatatatttaaggggaccatttgctt 44094389  T
Q  442 at 443  Q
    ||    
T  44094390 at 44094391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 32619040 - 32618932
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    |||||||||||||||| | | ||||||||||  ||| |||||||||| |||| ||||||||||||| || ||||  |||||||||||| ||||||| |||    
T  32619040 gttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaatttttcatttat 32618941  T
Q  306 gaaattaat 314  Q
     ||||||||    
T  32618940 aaaattaat 32618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 43907972 - 43907865
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||||||||||| |||||| ||||||||||||  |||||||||| ||  |||||||||||||| ||||||| |||||||  |||| |||||||| ||    
T  43907972 gttaaataagtaaatgatccct-taaatatactaatatttgattttagtccccctaaaatattttttaggttttttgttccttcaaaatttttcatccat 43907874  T
Q  306 gaaattaat 314  Q
     ||||||||    
T  43907873 aaaattaat 43907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 4475108 - 4475212
Alignment:
Q  208 ttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctatg 306  Q
    ||||||||||||| | |||  |||||||||| ||| ||||||||||||   ||||||||||| || ||| ||| |  |||| ||||||||||||||||||    
T  4475108 ttaaataagtaaaaagtcctcctaaatataccaacatttgattttaattcccctaaaatattctttagggttt-taatcctttaaaaattttcatctatg 4475206  T
Q  307 aaatta 312  Q
    ||||||    
T  4475207 aaatta 4475212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 460
Target Start/End: Original strand, 32618953 - 32619052
Alignment:
Q  360 ttttagatggaccaaaaagctaaggaatattctaaaaagactaaaatcatatttttgatatatttagagggactatttacttatttaccccggtttttat 459  Q
    ||||||| | || ||||| ||||  |||||| || |||||||||||||| || || |||||||||||| | |||||||||||||||| |||  |||||||    
T  32618953 ttttagaggaactaaaaatctaaaaaatattttagaaagactaaaatcaaatgtt-gatatatttagatgaactatttacttatttaaccctttttttat 32619051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 4304137 - 4304270
Alignment:
Q  199 tttttagagttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattt 297  Q
    ||||||| ||||||||| |||||  ||||  ||||||||| ||| |||||||||| || ||||||||||||| | | | |||  || | ||||||| |||    
T  4304137 tttttagggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaaaatttt 4304236  T
Q  298 tcatctatgaaattaatcttttctctacattgag 331  Q
     ||| |||||||||| ||  | ||||||||||||    
T  4304237 acatatatgaaattagtccatgctctacattgag 4304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 10821886 - 10821955
Alignment:
Q  260 taaaatatttttgaggttttctgttcctctaaaaattttcatctatgaaattaatcttttctctacattg 329  Q
    |||||||||||| ||| |||  || |||||||||| ||||||||||||||||| ||  ||| ||||||||    
T  10821886 taaaatattttttaggcttttggtccctctaaaaaatttcatctatgaaattagtcgcttccctacattg 10821955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 64079 - 63973
Alignment:
Q  207 gttaaataagtaaataatccctctaaatatactaac-tttgattttaatcttcctaaaatatttttgaggttttctgttcctctaaaaattttcatctat 305  Q
    ||||||| |||||||| || | |||||||||| ||| ||| |||||| |   ||||||||||| || |||||||  || ||||| ||| |||||||||||    
T  64079 gttaaatcagtaaatagtctccctaaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctctcaaatttttcatctat 63980  T
Q  306 gaaatta 312  Q
    |||||||    
T  63979 gaaatta 63973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 11624 - 11579
Alignment:
Q  286 ctctaaaaattttcatctatgaaattaatcttttctctacattgag 331  Q
    ||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  11624 ctctaaaatatttcatctatgaaattagtctcttctctacattgag 11579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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