View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_5 (Length: 544)
Name: NF4087_low_5
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 134 - 442
Target Start/End: Original strand, 22219030 - 22219338
Alignment:
| Q |
134 |
actaataggtaatgatagacatatcatagcaaaattaaacacattcattagaggaccttaaggattctgttccattttcaatattaccaatcttcacact |
233 |
Q |
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| T |
22219030 |
actaataggtaatgatagacatatcatagcaaaattaaacatattcattagaggaccttaaggattctgttccattttcaatattacgaatcttcacact |
22219129 |
T |
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| Q |
234 |
tgaggttttcaaacaagagagcaaaccttttagaaagaaagagtgtacatggctgaacgattagcaagaaacttcacatgcttgttatcttggtatgttt |
333 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22219130 |
tgaggttttcaaacaagagagctaaccttttagaaagaaagagtgtacatggctgaacgattagcaagaaacttcacatgcttgttatctcggtatgttt |
22219229 |
T |
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| Q |
334 |
tggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcacgaaactactcatctagcttacataattaacccgagtga |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
22219230 |
tggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcataaaactactcatctagcttacataattaacccaagtga |
22219329 |
T |
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| Q |
434 |
tcatagtgc |
442 |
Q |
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||||||||| |
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| T |
22219330 |
tcatagtgc |
22219338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 33103307 - 33103407
Alignment:
| Q |
342 |
gcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcacgaaactactcatctagcttacataattaacccgagtgatc-atagt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| || ||||||||||||||||||||| || ||||||| ||||| |
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| T |
33103307 |
gcattcatcacataaggatcattcactacaaaagtttaattaatctaatctc---aaattagtcatctagcttacataattaatccaagtgatcgatagt |
33103403 |
T |
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| Q |
441 |
gcat |
444 |
Q |
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|||| |
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| T |
33103404 |
gcat |
33103407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 33125804 - 33125895
Alignment:
| Q |
283 |
tggctgaacgattagcaagaaacttcacatgcttgttatcttggtatgttttggcccatgcattcatcacataaggatcattcactacaaaa |
374 |
Q |
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|||| |||| || |||||| ||||| ||||||||||| ||| || |||| |||||||||| ||||| |||| | |||||||| ||||||||| |
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| T |
33125804 |
tggcagaaccatcagcaaggaacttgacatgcttgttctctgggaatgtcttggcccatgaattcagcacaaatggatcattgactacaaaa |
33125895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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