View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_6 (Length: 492)
Name: NF4087_low_6
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 21271269 - 21270813
Alignment:
| Q |
18 |
aggatgaggcatttatttaaaaattgaaagatgcagaaattttcaacgtttataatttttcctcctttgattgatacttgtgtgattatcatttgccgga |
117 |
Q |
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| T |
21271269 |
aggatgaggcatttatttaaaaatggaaagatgcagaaattttcaacgttg-taatttttcctcctttgattgatacttgtgtgattatcatttgccgca |
21271171 |
T |
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| Q |
118 |
attttttaagttgcatcatgcgcaattctgttctttaggattttgaaccttctttatcagtgattgtccgaaagtacatgcccggaaaccttgatctata |
217 |
Q |
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| T |
21271170 |
cttttgtaagttgcatcatgtgcaattctgttctttaggattttgaaccttgtttctcagtgattgtccgaaagtacatgcccggaaaccttgatctaaa |
21271071 |
T |
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| Q |
218 |
ggagtgtctttattttaacagatcnnnnnnnaagtgaattggattagcaatttgcaaaacagatttagtaattttaaaaactgagctttagcaaccgcat |
317 |
Q |
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| T |
21271070 |
ggagtgtctttattttgacagatcttttttgaagtgaattggattagcaatttgcaaaacagatttagtaattttaaaaactgagctttagcaaccgcat |
21270971 |
T |
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| Q |
318 |
tatttagccttcgtaagctatgtgctgagttgattatttatacatatacgaagatatgtgctgatgtccatggtggtctcagcagcattacgaaagaaat |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21270970 |
tatttagtcttcgtaagctatgtgctgagttgattatttttacatatacgaagatatgtgctgatgtccatggtggtctcagcagcattacgaacgaaat |
21270871 |
T |
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| Q |
418 |
tatgaaacaaaagttatacttaaactccagtaacaacagaatgccacaacatggtagt |
475 |
Q |
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| T |
21270870 |
tatgaaacaaaagttatacttaaactccagtaacaacagaatgccacaacatggtagt |
21270813 |
T |
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