View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_7 (Length: 411)
Name: NF4087_low_7
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 48 - 395
Target Start/End: Complemental strand, 45656367 - 45656020
Alignment:
| Q |
48 |
ttaatgttataaaacaaatttgtgaatggtgcatgcttatttacttacttgtgtgcacgttagactaaatcttcaaactatgtgggtcacctggtacaca |
147 |
Q |
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| T |
45656367 |
ttaatgttataaaacaaatttgtgaatggtgcatgcttatttacttacttgtgtgcacgttagactaaatcttcaaactatgtgggtcacctggtacaca |
45656268 |
T |
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| Q |
148 |
ggtcatatggcctcatccatgttcattagcactatcttttcttaataaaagtccatgaatgtcactttcctccttctattatgcatatcacagatgnnnn |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656267 |
ggtcatatggcctcatccatgttcattagcactatcttttcttaataaaagtccatgaatgtcactttcctccttctattatgcatatcacagatgtttt |
45656168 |
T |
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| Q |
248 |
nnnnnnnnnnnnnnnccatgtaatctaaatctattgataaaatccattttaactttgaaccgtctctttcaaaatagcagtctaacttctagtatctcaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45656167 |
gcttttttgctttttccatgtaatctaaatctattgataaaatccattttaactttgaaccatctctttcaaaatagcagtctaacttctagtatctcaa |
45656068 |
T |
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| Q |
348 |
tcattctgaatctttttgtttgaaattcactatctattgaaaacacac |
395 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656067 |
tcattcagaatctttttgtttgaaattcactatctattgaaaacacac |
45656020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45656971 - 45656921
Alignment:
| Q |
1 |
aatatgactatttcgaaaagttttatttatttattcaaattatactgttaa |
51 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
45656971 |
aatatgactatttcgaaaagttttttttatttattcaaattatactcttaa |
45656921 |
T |
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