View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_9 (Length: 379)
Name: NF4087_low_9
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 1694138 - 1693782
Alignment:
| Q |
13 |
tcatcacattatttggaaaagtagtgtataagttttcattcattgaaatataacctaagttcacaattgnnnnnnnnnnn--------gctctaaaactg |
104 |
Q |
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| T |
1694138 |
tcatcacattatttggaaaagtagtgtataagttttcatt-attgaaatataacctaagttcacaattgaaaaaaaaaaaaaaaaaaagctctaaaactg |
1694040 |
T |
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| Q |
105 |
catccgtaaaatcatcagattcaattccatctctttcatctccatctagtaaatgaccagatatttctacttcacagcctcaaaaaactacattgtcaat |
204 |
Q |
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| T |
1694039 |
catccataaaataatcagattcaattccatctctttcatctccatctagtaaatgaccagatatttctacttcacagactcaaaaaactactttgtcaat |
1693940 |
T |
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| Q |
205 |
ttgaaaatnnnnnnncc-acatgttgggaaaggaaaatatgaagctcataaacaagtgggagtgttctaaaataatgtaaataagataagaatccaaata |
303 |
Q |
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| T |
1693939 |
ttgaaaataaaaaaacccacatgttgggaaaggaaaatatgaagctcataaacaagtgggagtgttgtaaaataatgtaaataagataagaatccaaata |
1693840 |
T |
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| Q |
304 |
tgtctctcatctaatgaaacttatagacatattggaaattcatcgtacacataaaatg |
361 |
Q |
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| T |
1693839 |
tgtctctcatctaatgaaacttatagacatattggaaattcatcgtacacataaaatg |
1693782 |
T |
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