View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_high_1 (Length: 522)
Name: NF4088_high_1
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 45101008 - 45100497
Alignment:
| Q |
18 |
aaaaattccaccaagcactaagtagaattagagtatatacta---tactatagtacaagaaatacccaaagaataaattaatcaggcactgccttatgtg |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45101008 |
aaaaattccaccaagcactaagcagaattagagtatatactactatactatagtgcaagaaatacccaaagaataaattaatcaggcactgccttatgtg |
45100909 |
T |
|
| Q |
115 |
aagctggcatgcaccagataatgagaattaataacagtaccctactatttccccagataaggattgagcgacacatacactatatatgctttgccaattg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45100908 |
aagctggcatgcaccagataatgagaattaataacagtaccctactatttccccagataaggattgagcgacacatacactatatatgctttgccaattg |
45100809 |
T |
|
| Q |
215 |
gtggctttagttacaaaggtccatcatcttatctaagctaaggaaattgatgctaacatcaacctctgagtgtgatctgtaaactaccatcatagtggga |
314 |
Q |
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| T |
45100808 |
gtggctttagttacaaaggtccatcatcttatctaagctcaggaaattgatgctaacatcaacctctgagtgtgatctgcaaactactatcatagtggga |
45100709 |
T |
|
| Q |
315 |
tgtttggttggcaaa-----------atgcaaatttttcaacaaattt--ccatgtataataaataataagatacgagcaatgaaacatagacatagaca |
401 |
Q |
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||| ||||||||||| || | ||| | | ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
45100708 |
tgtctggttggcaaatactttgatatatatatattacttatgcaatttttccatgtataacaaataataagatacgagcaataaaacatagacatagaca |
45100609 |
T |
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| Q |
402 |
caaacattaa------aataacaatgacaatgttatatcattgtcatataccaacacatatcggatactaaacatattttttaattcaaagtgtacgtcc |
495 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
45100608 |
caaacattaaaataacaataacaatgacaatgttatatcattgtcatataccaacacatgtcggatactaaacatattttttaattcaaagtgtaggtcc |
45100509 |
T |
|
| Q |
496 |
cacatagtataa |
507 |
Q |
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|||||||||||| |
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| T |
45100508 |
cacatagtataa |
45100497 |
T |
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