View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4088_high_14 (Length: 256)

Name: NF4088_high_14
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4088_high_14
NF4088_high_14
[»] chr3 (9 HSPs)
chr3 (114-220)||(20020483-20020589)
chr3 (1-81)||(14856837-14856918)
chr3 (114-222)||(19967692-19967800)
chr3 (114-225)||(20027290-20027401)
chr3 (1-50)||(19962614-19962663)
chr3 (1-50)||(19967304-19967353)
chr3 (1-50)||(20027740-20027789)
chr3 (114-222)||(19962999-19963107)
chr3 (1-50)||(20020925-20020974)
[»] chr6 (1 HSPs)
chr6 (52-85)||(266388-266421)
[»] chr4 (2 HSPs)
chr4 (48-81)||(35615451-35615484)
chr4 (53-85)||(44356676-44356708)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 20020589 - 20020483
Alignment:
Q  114 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 213  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||    
T  20020589 gtttattggttatcaaggtttgtatttccttcagattcttatgataccatttccaaagctgtttttcctattgcaatacgtttagctcatggaaataaga 20020490  T
Q  214 tagctct 220  Q
    |||||||    
T  20020489 tagctct 20020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14856918 - 14856837
Alignment:
Q  1 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaagacttaatagcagttttaa-cccctaactttc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||| ||||||||||||    
T  14856918 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaaggtttaatagcagttataaccccctaactttc 14856837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 19967692 - 19967800
Alignment:
Q  114 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 213  Q
    |||||||||||||||||||| |||||||||  | ||||| ||||||| ||||| ||| ||| | | ||||| ||||||| ||||||||||||||||   |    
T  19967692 gtttattggttatcaaggtttgtttttcctgaagattctcatgatactatttcgaaaactgttatccctattgcaatacttttagctcatggaaatagaa 19967791  T
Q  214 tagctcttg 222  Q
    |||||||||    
T  19967792 tagctcttg 19967800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 20027401 - 20027290
Alignment:
Q  114 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 213  Q
    ||||||||||||  |||||| |||||||||  | ||||||||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||||   |    
T  20027401 gtttattggttacaaaggtttgtttttcctgaagattcttatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa 20027302  T
Q  214 tagctcttggac 225  Q
    ||||||||||||    
T  20027301 tagctcttggac 20027290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19962614 - 19962663
Alignment:
Q  1 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 50  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  19962614 ggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa 19962663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19967304 - 19967353
Alignment:
Q  1 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 50  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  19967304 ggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaa 19967353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20027789 - 20027740
Alignment:
Q  1 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 50  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  20027789 ggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa 20027740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 19962999 - 19963107
Alignment:
Q  114 gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga 213  Q
    ||||||||||||  |||||| |||||||||  | ||||| ||||||| ||||||| | ||| | | ||||| ||||||| ||||||||||||||||   |    
T  19962999 gtttattggttacaaaggtttgtttttcctgaagattctcatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa 19963098  T
Q  214 tagctcttg 222  Q
    |||||||||    
T  19963099 tagctcttg 19963107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20020974 - 20020925
Alignment:
Q  1 ggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa 50  Q
    |||||| ||||||  |||||||||||||||| ||||||||||||||||||    
T  20020974 ggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaa 20020925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 266421 - 266388
Alignment:
Q  52 acttaatagcagttttaacccctaactttctcaa 85  Q
    |||||||| |||||||||||||||||||||||||    
T  266421 acttaatatcagttttaacccctaactttctcaa 266388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 35615484 - 35615451
Alignment:
Q  48 gaagacttaatagcagttttaacccctaactttc 81  Q
    |||||||||||||||||||| |||||||||||||    
T  35615484 gaagacttaatagcagttttcacccctaactttc 35615451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 44356708 - 44356676
Alignment:
Q  53 cttaatagcagttttaacccctaactttctcaa 85  Q
    |||||||||||||||| ||||||||||||||||    
T  44356708 cttaatagcagttttagcccctaactttctcaa 44356676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University