View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4088_high_18 (Length: 238)

Name: NF4088_high_18
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4088_high_18
NF4088_high_18
[»] chr6 (18 HSPs)
chr6 (17-229)||(5097097-5097309)
chr6 (17-187)||(5370960-5371130)
chr6 (18-187)||(5127939-5128108)
chr6 (56-187)||(5157150-5157281)
chr6 (98-190)||(5354106-5354198)
chr6 (85-187)||(5350815-5350917)
chr6 (85-187)||(5102166-5102268)
chr6 (85-187)||(5137218-5137320)
chr6 (78-187)||(5426330-5426439)
chr6 (114-187)||(5397463-5397536)
chr6 (17-112)||(2938481-2938575)
chr6 (86-184)||(5448009-5448107)
chr6 (98-203)||(5243390-5243496)
chr6 (98-187)||(5434685-5434774)
chr6 (99-190)||(5066186-5066277)
chr6 (117-186)||(5181474-5181543)
chr6 (56-90)||(5434616-5434650)
chr6 (123-171)||(5256902-5256950)
[»] chr7 (1 HSPs)
chr7 (86-186)||(36213382-36213482)
[»] chr3 (4 HSPs)
chr3 (20-133)||(47986477-47986590)
chr3 (20-133)||(47995764-47995877)
chr3 (20-133)||(48005051-48005164)
chr3 (20-133)||(48014336-48014449)
[»] chr5 (1 HSPs)
chr5 (114-187)||(8878113-8878186)
[»] chr4 (1 HSPs)
chr4 (117-161)||(6651541-6651585)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 5097097 - 5097309
Alignment:
Q  17 atatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5097097 atatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaag 5097196  T
Q  117 tctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtcttatctatctctctttgccccccttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5097197 tctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtcttatctatctctcttttccccccttgt 5097296  T
Q  217 atgtttgtctgtg 229  Q
    |||||||||||||    
T  5097297 atgtttgtctgtg 5097309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 5370960 - 5371130
Alignment:
Q  17 atatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaag 116  Q
    |||||| | ||||||||||| | | ||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||  | |    
T  5370960 atatgcgatagattataaggagatggaaccaactgcaattacatcacaagtatcaaataagactacttctacatcacaagtatcaaaacattcctcaacg 5371059  T
Q  117 tctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 187  Q
    ||||||||||||||||| |||| |||||||| | | || |||||| ||||||||| |||| ||||||||||    
T  5371060 tctcttttaattcaaattggaatgaattgccgaataactaatattctgaaagagataattttacaggtttg 5371130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 5128108 - 5127939
Alignment:
Q  18 tatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagt 117  Q
    ||||||||| ||||||||| ||| |||  || ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||  ||||    
T  5128108 tatgccacaaattataaggagttggaacaaactgcaagtacatcacaagtatcaattatgactacttctacatcacaagtatcaaaacattcctcgaagt 5128009  T
Q  118 ctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 187  Q
    | || ||||||||||| |||| ||||||||||||||| |||||| |||||| ||  ||| ||||||||||    
T  5128008 cgctattaattcaaattggaaagaattgccaagtcactaatattctgaaagggattattttacaggtttg 5127939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 5157281 - 5157150
Alignment:
Q  56 tacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcacc 155  Q
    |||||||||  |||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||| |||| ||||||||||| |||     
T  5157281 tacatcacaattatcaaatgtgactacttctacatcccaagtatcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccact 5157182  T
Q  156 aatattttgaaagagaaaattgtacaggtttg 187  Q
    |||||| ||||||| | |||| ||||||||||    
T  5157181 aatattctgaaagatataattttacaggtttg 5157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 5354198 - 5354106
Alignment:
Q  98 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct 190  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||    
T  5354198 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtct 5354106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 5350815 - 5350917
Alignment:
Q  85 ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 184  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||||| |||| |||||||    
T  5350815 ctacatcaaaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagagataattttacaggt 5350914  T
Q  185 ttg 187  Q
    |||    
T  5350915 ttg 5350917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 5102268 - 5102166
Alignment:
Q  85 ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 184  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||| | |||| |||||||    
T  5102268 ctacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt 5102169  T
Q  185 ttg 187  Q
    |||    
T  5102168 ttg 5102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 5137320 - 5137218
Alignment:
Q  85 ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 184  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||| | |||| |||||||    
T  5137320 ctacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt 5137221  T
Q  185 ttg 187  Q
    |||    
T  5137220 ttg 5137218  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 5426330 - 5426439
Alignment:
Q  78 actacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattg 177  Q
    |||||| ||||||| ||||||||| |||||||||| || ||||||||||||||||| |||| ||||||||||| | |  ||||| ||||||||| ||||     
T  5426330 actactgctacatcccaagtatcaaaacattccttaaaatctcttttaattcaaattggaatgaattgccaagcctctgatattctgaaagagataattt 5426429  T
Q  178 tacaggtttg 187  Q
    ||||||||||    
T  5426430 tacaggtttg 5426439  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 5397463 - 5397536
Alignment:
Q  114 aagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 187  Q
    |||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||| |||| ||||||||||    
T  5397463 aagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttg 5397536  T

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Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 2938481 - 2938575
Alignment:
Q  17 atatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattcctt 112  Q
    |||||| | ||||||||||| | | ||| ||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  2938481 atatgcgatagattataaggagatggaaccaactacaattacatcacaagtatcaa-tatgactacttctacatcacaagtatcaaaacattcctt 2938575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 5448009 - 5448107
Alignment:
Q  86 tacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 184  Q
    |||||||||| ||||| | |||| ||| |||||||||||||||||||| |||| ||||||| |||||||  ||||| ||||||||| |||| |||||||    
T  5448009 tacatcacaaatatcaaaccatttcttgaagtctcttttaattcaaattggaatgaattgcgaagtcactgatattctgaaagagataattttacaggt 5448107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 5243496 - 5243390
Alignment:
Q  98 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtc-ttatcta 196  Q
    ||||||| ||| ||| |||||| || |||| |||||||||| |||||||||||| ||||||| | | ||||| || ||| |||||||||||| || ||||    
T  5243496 atcagaagattacttaaagtctgttctaatacaaatgggaatgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttgtcattctcta 5243397  T
Q  197 tctctct 203  Q
    |||||||    
T  5243396 tctctct 5243390  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 5434685 - 5434774
Alignment:
Q  98 atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 187  Q
    |||| ||||||||||||| |||||||||||||||||| ||| ||||||| || ||||||| ||| |  ||||||  ||| ||||||||||    
T  5434685 atcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaactcaccaacattctcgaagagatcattttacaggtttg 5434774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 5066277 - 5066186
Alignment:
Q  99 tcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct 190  Q
    ||||||| |||| | |||||| || |||| |||||||| | |||||||||||||||||||| | ||||||| || ||  |||||||||||||    
T  5066277 tcagaactttccatgaagtctgttctaatacaaatgggtatgaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttgtct 5066186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 5181543 - 5181474
Alignment:
Q  117 tctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggttt 186  Q
    ||||| || |||||||| |||| |||||||||||||||||||||| ||| ||| || ||| |||||||||    
T  5181543 tctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggttt 5181474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 5434616 - 5434650
Alignment:
Q  56 tacatcacaggtatcaaatatgactacttctacat 90  Q
    ||||||||| |||||||||||||||||||||||||    
T  5434616 tacatcacaagtatcaaatatgactacttctacat 5434650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 5256950 - 5256902
Alignment:
Q  123 ttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagaga 171  Q
    ||||||||||||||||  |||||||| |||||||||||| | |||||||    
T  5256950 ttaattcaaatgggaataaattgccatgtcaccaatattctcaaagaga 5256902  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 36213482 - 36213382
Alignment:
Q  86 tacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtt 185  Q
    |||||| |||||||||  | ||||||| || ||| |||| ||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||||    
T  36213482 tacatcgcaagtatcaagaaattccttgaaatcttttttcattcaaatgggaatgaattgccaactttccaatattttgaaagagaaaattgtacaggtt 36213383  T
Q  186 t 186  Q
    |    
T  36213382 t 36213382  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 47986590 - 47986477
Alignment:
Q  20 tgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtct 119  Q
    |||||||| || |||||  || |||||||||||||  ||||||||| |||||||||||||||||||||||     || |||| || |||||||||| |||    
T  47986590 tgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaatattccttcaaatct 47986491  T
Q  120 cttttaattcaaat 133  Q
    ||||||||||||||    
T  47986490 cttttaattcaaat 47986477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 47995877 - 47995764
Alignment:
Q  20 tgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtct 119  Q
    |||||||| || |||||  || |||||||||||||  ||||||||| |||||||||||||||||||||||     || |||| || |||||||||| |||    
T  47995877 tgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaatattccttcaaatct 47995778  T
Q  120 cttttaattcaaat 133  Q
    ||||||||||||||    
T  47995777 cttttaattcaaat 47995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 48005164 - 48005051
Alignment:
Q  20 tgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtct 119  Q
    |||||||| || |||||  || |||||||||||||  ||||||||| |||||||||||||||||||||||     || |||| || |||||||||| |||    
T  48005164 tgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaatattccttcaaatct 48005065  T
Q  120 cttttaattcaaat 133  Q
    ||||||||||||||    
T  48005064 cttttaattcaaat 48005051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 48014449 - 48014336
Alignment:
Q  20 tgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtct 119  Q
    |||||||| || |||||  || |||||||||||||  ||||||||| |||||||||||||||||||||||     || |||| || |||||||||| |||    
T  48014449 tgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggatcaaaatattccttcaaatct 48014350  T
Q  120 cttttaattcaaat 133  Q
    ||||||||||||||    
T  48014349 cttttaattcaaat 48014336  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 8878113 - 8878186
Alignment:
Q  114 aagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg 187  Q
    |||||||| || ||||||||||||| |||||||||| | || |||| | |||||||||||||| ||||||||||    
T  8878113 aagtctctatttattcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttg 8878186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 6651541 - 6651585
Alignment:
Q  117 tctcttttaattcaaatgggaacgaattgccaagtcaccaatatt 161  Q
    ||||| |||||||||||||||||||| ||||||||| | ||||||    
T  6651541 tctctcttaattcaaatgggaacgaaatgccaagtctctaatatt 6651585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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