View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_high_3 (Length: 470)
Name: NF4088_high_3
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 61 - 455
Target Start/End: Complemental strand, 27011502 - 27011104
Alignment:
| Q |
61 |
ttattaggataatgggaaattggacacatgtcaaagtttttaaattgtgcatattatgtgtttggacattctcgtttcatgggtgaggttcaagtgcatt |
160 |
Q |
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| T |
27011502 |
ttattaggataatgggaaattggacacatgtcaaagtttttaaattgtgcatattatgtatttggacattctcgtttcatggatgaggtttaagtgcatt |
27011403 |
T |
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| Q |
161 |
ttaaaatagtattagagtcaaattatggagatcatatgaaaattgaatccagacgcacgttagacgtgaggtagattttgtagttaaattgaagtttcgt |
260 |
Q |
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| T |
27011402 |
ttaaaatggtattagagtcaaattatgcagatcatatgaaaattgaatccagacgcacgttagacgtg-ggtagattttgtagttaaattgaattttcat |
27011304 |
T |
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| Q |
261 |
attgtcaatatttgtgaattgtgtaacaatgtatatacgtgcttggatgatctcatattatgaac-----taattttgagagtgaaattcaatcacattt |
355 |
Q |
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| T |
27011303 |
attgtcaatatttgtgaattgtgtaacaatgtatatacgtgcttggatgatctcatattatgaactacagtaattttgagagtgaaattcaatcacattt |
27011204 |
T |
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| Q |
356 |
aacaatttccgcaccacttttgcaagcaggtgattactgtgctcaatctaaaagacgcactatacatgtatctaagtttgatttctgataatgaagtaat |
455 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27011203 |
aacaatttccgcaccacttttgcaaacaggtgattaatgtgctcaatctaaaagacgcactatacatgtatctaagtttgatctctgataatgaagtaat |
27011104 |
T |
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