View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_high_6 (Length: 426)
Name: NF4088_high_6
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_high_6 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 251700 - 252127
Alignment:
| Q |
1 |
gaagttgttggaaagaatacactcgttgtgaaatgaccaaggtcgaaggtaccacattcatggtcaaaactcaaaacagaaaatatgtcatcaaaattca |
100 |
Q |
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| T |
251700 |
gaagttgttggaaagaatacactcgttgtgaaatgaccaaggtcgaaggtaccacattcatggtcaaaactcaaaacagaaaatatgtcatcaaaattca |
251799 |
T |
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| Q |
101 |
aaagatgaccaaatagaatttggttcatagttgaatgctaacggacttaatgtccatcacaaactacatcaaacagagagaaccataatatggaaaatgt |
200 |
Q |
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| T |
251800 |
aaagatgaccaaatagaatttggttcatagttgaatgctaacggacttaatgtccatcacaaactacattaaacagagagaaccataatatggaaaatgt |
251899 |
T |
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| Q |
201 |
tattataattgtcattgttaaatatgtagaaaaagacacgaacttcagatctagagcaatagaactccacaacagaacaaaaagtccaaactgcaccaaa |
300 |
Q |
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| T |
251900 |
tattatgattgtcattgttaaatatgtagaaaaagacacgaacttcagatctagagcaatagaactccacaacagaacaaaaagtccaaactgcaccaaa |
251999 |
T |
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| Q |
301 |
gccggct--------------aaaacgaatacctgccagataacagaagacgaaaaagtgagacaactgccatcgtgaagacaaaggtcgtgttggagaa |
386 |
Q |
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| T |
252000 |
gccggctaaaaccaagcaaccaaaacgaatacctgccagataacagaagacgaaaaagtgagacaactgccatcgtgaagacaaaggtcgtgttggagaa |
252099 |
T |
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| Q |
387 |
tagtgagagctatgaggaaaaatgtgat |
414 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
252100 |
tagtgagagctatgaggaaaaatgtgat |
252127 |
T |
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