View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_high_8 (Length: 365)
Name: NF4088_high_8
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 19292425 - 19292756
Alignment:
| Q |
19 |
agaagtggacttatttagatttttgtttggcttttcaagtttaaattatgatggatgtttttagcctataagctaatcttggttttagcagaacaataca |
118 |
Q |
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| T |
19292425 |
agaagtggatttatctagatttttgtttggcttttcaagtttaaattgtgatggatgtttttaggctataagctaatcttggttttagcagaacaataca |
19292524 |
T |
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| Q |
119 |
caaatatatgtagcaactttaggctatatattctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcatatttcaaga |
218 |
Q |
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| T |
19292525 |
caaatat--gtagcaactttaggctat----tctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcatattccaaga |
19292618 |
T |
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| Q |
219 |
aatcctagtatagtttctcatcactaaatcttacatttgtgaaat----tatctccatgcattgatgtcaataggtatcataattaatctttaaaattct |
314 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19292619 |
aatcctagtatagtttctcatcgcaaaatcttacatttgtgaaattatatatctccatgcattgatctcaataggtatcataattaatctttaaaattct |
19292718 |
T |
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| Q |
315 |
acatcctcctcttgtgacaatagttgatgtttatctct |
352 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
19292719 |
acatccacctcttgtgacaatagttgatgtttatctct |
19292756 |
T |
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