View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_high_9 (Length: 339)
Name: NF4088_high_9
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 33531357 - 33531694
Alignment:
| Q |
1 |
tctttattgcagttcaatgccttttctgcttctcccaacctgcattaaaattttcaattctatnnnnnnncaataacacaaaaagaaacacaaccattaa |
100 |
Q |
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| T |
33531357 |
tctttattgcagttcaatgccttttctgcttctcccaacctgcattaaaattttcaattctataaaaaaacaataacacaaaaacaaacacaaccattaa |
33531456 |
T |
|
| Q |
101 |
tataactaagtgattgagctcaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaacaacttttggtc |
200 |
Q |
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| T |
33531457 |
tataactaagtgattgagcccaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaataacttttggtc |
33531556 |
T |
|
| Q |
201 |
caacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaattcagaggattaagacaggtatactatttaattgagtgaagca |
300 |
Q |
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| T |
33531557 |
cgacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaattcagaggattaagaaaggtatactatttaattgagtgaagca |
33531656 |
T |
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| Q |
301 |
tattaagttattcatcattaacaagtacctgaagtata |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33531657 |
tattaagttattcatcattaacaagtacctgaagtata |
33531694 |
T |
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