View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_1 (Length: 528)
Name: NF4088_low_1
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 33495035 - 33495317
Alignment:
| Q |
30 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgannnnnnnnnaacaatctaagataaaattttgaaacttgtattattaattttgataca |
129 |
Q |
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| T |
33495035 |
ttgtgtgcaactatttttcattcatttccaatcaaataattgattttttt--aacaatcaaagataaaattttgaaacttgtattattaattttgataca |
33495132 |
T |
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| Q |
130 |
aaaaagcggatagacattcatgttagtaacgaa-ttatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacc |
228 |
Q |
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| T |
33495133 |
aaaaagcggatagacattcatgttagtaacgaaattatatatagtaatcacgtaaaattctgataaaagggtcataaagcaaaacaaaattttaattacc |
33495232 |
T |
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| Q |
229 |
tctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatggccatgttcatgaccctctccatg |
313 |
Q |
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| T |
33495233 |
tctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatgaccatgttcatgaccctctccatg |
33495317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 344 - 528
Target Start/End: Original strand, 33495348 - 33495532
Alignment:
| Q |
344 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttctccatggtgtccttccttgtggtctccatgacca |
443 |
Q |
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| T |
33495348 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttccccatggtgtccttccttgtggtctccatgacca |
33495447 |
T |
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| Q |
444 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccatggtgttctc |
528 |
Q |
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| T |
33495448 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccgtggtgttctc |
33495532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 9757748 - 9757719
Alignment:
| Q |
255 |
aagatctaatcactgtcactgctgctgcta |
284 |
Q |
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| T |
9757748 |
aagatctaatcactgtcactgctgctgcta |
9757719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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