View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_12 (Length: 303)
Name: NF4088_low_12
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 26425283 - 26425571
Alignment:
| Q |
1 |
atttgattggattgatgcaactgcacctgtaaaaaagttttacatcgtcttgaacatgattttttggcaatagaaa-gatttaattaaatattcacgttg |
99 |
Q |
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| T |
26425283 |
atttgattggatcgatgcaactgcacctttaaaaaagttttacatcgtcttgaacatgattttttggcgatagaaaagatttaattaaatattcacgttg |
26425382 |
T |
|
| Q |
100 |
gcatgtatgacaaatcatataatatttttaaacttttagtacattgagtaagaattaatttgataaatcgaactcaatatgggttcacatattttaatac |
199 |
Q |
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| T |
26425383 |
gcatgtatgacaaatcatataatatttttaaacttttagtacattgagtaagaattaatttgataaatcgaactcaatatgggttcacatattttaatac |
26425482 |
T |
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| Q |
200 |
catgcatattatttctcttatattttcaccgcagaannnnnnngtgcaaaaccccaagcaaataataaccactcttgaaacatatattg |
288 |
Q |
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| T |
26425483 |
catgcatattatttctcttattttttcaccgcagaatttttttgtgcaaaaccccaagcaaataataaccactcttgaaacatatattg |
26425571 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 28010674 - 28010552
Alignment:
| Q |
104 |
gtatgacaaatcatataatatttttaaacttttagtacattgagtaagaattaatttgataaatcgaa-ctcaatatgggttcacatattttaataccat |
202 |
Q |
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||||| ||||||||||||||||||||| |||||||||||| | |||| ||||||||||| || |||||| ||| |||||||||||||||| |
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| T |
28010674 |
gtatgtcaaatcatataatatttttaagcttttagtacatagtgtaa-------tttgataaatcaaaactcaattgtggt---catattttaataccat |
28010585 |
T |
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| Q |
203 |
gcatattatttctcttatattttcaccgcagaa |
235 |
Q |
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| T |
28010584 |
gcataacatttctcttcttttttcaccgcagaa |
28010552 |
T |
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