View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_13 (Length: 269)
Name: NF4088_low_13
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_13 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: scaffold0025 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 48605 - 48350
Alignment:
| Q |
1 |
ctttagctcatatagtttcttcttggcaggctcaacatcattttgaattatgtcagagagtacctgaatcaagggaagcagaggttcatataagattggt |
100 |
Q |
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| T |
48605 |
ctttagctcatatagtttcttcttggcaggctcaacatcattttgaattatgtcagagagtacctgaatcaagggaagcagaggttcatataagattggt |
48506 |
T |
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| Q |
101 |
aattcatctacccaatgtcacattacctgtcacatcatcatcaatcaagtaaaaataaactagcatggaaaacacagaagagttgcttcatgatttttag |
200 |
Q |
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| T |
48505 |
aattcatctacccaatgtcacattacctgtctcatcatcatcaatcaagtcaaaataaactagcatggaaaacacacaagagttgcttcatgatttttag |
48406 |
T |
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| Q |
201 |
cttgtcctggatattaagatccatgtcactacaggttgtatacattaatcacaggt |
256 |
Q |
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| T |
48405 |
cttgtcctggatattaagatccatgtcactacaggttgtatacattaatcacaggt |
48350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18038691 - 18038806
Alignment:
| Q |
1 |
ctttagctcatatagtttcttcttggcaggctcaacatcattttgaattatgtcagagagtacctgaatcaagggaagcagaggttcatataagattggt |
100 |
Q |
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|||||| || || |||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||| ||| ||| ||||||||| ||||||| |
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| T |
18038691 |
ctttagttcgtagagtttcttcttggcagactcaacatcattttgaattaagt-agagagtacct-aatcaaggtaagaagaagttcatatatgattggt |
18038788 |
T |
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| Q |
101 |
aattcatctacccaatgt |
118 |
Q |
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| T |
18038789 |
aattcatataaccaatgt |
18038806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45409953 - 45409888
Alignment:
| Q |
1 |
ctttagctcatatagtttcttcttggcaggctcaacatcattttgaattatgtcagagagtacctg |
66 |
Q |
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|||||| | ||||||||||||||| ||||||||| ||| | |||||||||||||| |||||||| |
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| T |
45409953 |
ctttagtttatatagtttcttcttcgcaggctcagtatcgtcttgaattatgtcagttagtacctg |
45409888 |
T |
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