View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_14 (Length: 266)
Name: NF4088_low_14
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6551933 - 6551677
Alignment:
| Q |
1 |
tgaaggaaatgtttaaagaacaaagaaaacnnnnnnngcatacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaa |
100 |
Q |
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| T |
6551933 |
tgaaggaaatgtttaaagaacaaagaaaacaaaaaaagcatacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaa |
6551834 |
T |
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| Q |
101 |
taatgttctagaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcagaattcctttcaatagaggatgga |
200 |
Q |
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| T |
6551833 |
taatgttctagaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcagaattcctttcaatagaggatgga |
6551734 |
T |
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| Q |
201 |
ttttcaacgtctccaagatcaaaacctccattgctactgaaaaggtctagttcatct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551733 |
ttttcaacgtctccaagatcaaaacctccattgctactgaaaaggtctagttcatct |
6551677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 49061082 - 49061200
Alignment:
| Q |
40 |
atacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctcc |
139 |
Q |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |
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| T |
49061082 |
atacctcaaaaagagctttcaattcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctac |
49061181 |
T |
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| Q |
140 |
ggcgattgagctattacga |
158 |
Q |
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| T |
49061182 |
ggcgaatgaggtgttacga |
49061200 |
T |
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