View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_15 (Length: 260)
Name: NF4088_low_15
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 5160497 - 5160268
Alignment:
| Q |
13 |
cagaacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtat |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5160497 |
cagaatctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttaccaattgatgaaggtat |
5160398 |
T |
|
| Q |
113 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160397 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
5160298 |
T |
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| Q |
213 |
atatccatataattaatgttatgattatgt |
242 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
5160297 |
atatccaaataattaatgttatgattatgt |
5160268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 5182739 - 5182515
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
5182739 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatt |
5182640 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
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|||||||||||||||||||||||||||||| | || |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||||||||| |
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| T |
5182639 |
tccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgtttgatata |
5182540 |
T |
|
| Q |
216 |
tccatataattaatgttatgattat |
240 |
Q |
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|||| |||||| ||||||||||||| |
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| T |
5182539 |
tccaaataattcatgttatgattat |
5182515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 5196139 - 5195936
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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| T |
5196139 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttaccaattgatgaaggtatatt |
5196040 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
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|||||||||||||||||||||||||||||| | ||| || | |||||||||| | | | |||||||| ||||| ||||| |||||||||||||||||| |
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| T |
5196039 |
tccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaaccactcaaattgttgtttgatata |
5195940 |
T |
|
| Q |
216 |
tcca |
219 |
Q |
| |
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|||| |
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|
| T |
5195939 |
tcca |
5195936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 5214296 - 5214093
Alignment:
| Q |
16 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
115 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
5214296 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatt |
5214197 |
T |
|
| Q |
116 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
215 |
Q |
| |
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|||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| |||||||| || || ||||||||| ||||| |||||||| |
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| T |
5214196 |
tccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttggaagaaaaccacttaaactgttgattgatata |
5214097 |
T |
|
| Q |
216 |
tcca |
219 |
Q |
| |
|
|||| |
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|
| T |
5214096 |
tcca |
5214093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 5173400 - 5173252
Alignment:
| Q |
20 |
tgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttcct |
119 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||| |
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| T |
5173400 |
tgtggccagttgtttaggtaactcacctgagaaattattatgagagaggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttcct |
5173301 |
T |
|
| Q |
120 |
tcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaata |
168 |
Q |
| |
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|||||||||||||||||||||||||| | ||| |||||||||||||| |
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| T |
5173300 |
tcaaagctattccatgaaaagttcaaataggtaatacttggaaggaata |
5173252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 4856686 - 4856816
Alignment:
| Q |
110 |
tatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgttt |
209 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| | ||| |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||| |
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| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
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| Q |
210 |
gatatatccatataattaatgttatgattat |
240 |
Q |
| |
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|||||||||| |||||| ||||||||||||| |
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| T |
4856786 |
gatatatccaaataattcatgttatgattat |
4856816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 4842125 - 4842321
Alignment:
| Q |
23 |
ggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttccttca |
122 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||| |
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| T |
4842125 |
ggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttca |
4842224 |
T |
|
| Q |
123 |
aagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatatatcca |
219 |
Q |
| |
|
||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| ||||| || ||||| ||||| |||||||||||||||| ||||| |
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| T |
4842225 |
aagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaaccactaaaattgttgtttgatagatcca |
4842321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 7142598 - 7142473
Alignment:
| Q |
94 |
taccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaaccc |
193 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||| |||||||||||| | | |||| |||||||||| | ||| ||||| || ||||| || |
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| T |
7142598 |
taccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaagcaaacc |
7142499 |
T |
|
| Q |
194 |
acttaaattgttgtttgatatatcca |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
7142498 |
acttaaattgttgtttgatatatcca |
7142473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 4856621 - 4856676
Alignment:
| Q |
19 |
ctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaag |
74 |
Q |
| |
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||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
4856621 |
ctgtggccaattgttcaggtaactcacctgagaaatgattctgagagaggtccaag |
4856676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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