View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_3 (Length: 508)
Name: NF4088_low_3
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_3 |
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| [»] scaffold0767 (1 HSPs) |
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| [»] scaffold0758 (1 HSPs) |
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Alignment Details
Target: scaffold0767 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0767
Description:
Target: scaffold0767; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Original strand, 2327 - 2813
Alignment:
| Q |
9 |
acatcatcaaaaacatacggagcctaaagttatgtgcttcaccatcaacaaaccaaacattattatagagatagtagagttaacaatagttcatgatcca |
108 |
Q |
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| T |
2327 |
acatcatcaaaaacatacggagcctaaagttatgtgcttcaccatcaacaaaccaaacattattatagagatagtagagttaacaatagttcatgatgca |
2426 |
T |
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| Q |
109 |
acaatctttctttgttggttccctccaaaccctacaatacgtccttctttcatgaccagttctttcnnnnnnn--cttaatcgaccatgtaataataaaa |
206 |
Q |
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| T |
2427 |
acaatctttctttgttggttccctccaaaccctacaatacgtccttctttcatgaccagttctttcaaaaaaaaacttaatcgaccatgtaataataaaa |
2526 |
T |
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| Q |
207 |
agatttaattatagaatnnnnnnngtaggaatatacttgaataaccgaaaaagaaatagaaaaaggtatttgactgatagaagagataaaatgtattgac |
306 |
Q |
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| T |
2527 |
agatttaattatagaataaaaaaagtaggaatatacttgaataaccgaaaaagaaatagaaaaaggtatttgactgatagaagagataaaatgtattgac |
2626 |
T |
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| Q |
307 |
cttgatgacatggcttgttgaaaaaataacacattctgagtggttgatagcaaggacgaatttaaatccgttaaaaagcgacaacaaaatagaagcctcc |
406 |
Q |
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| T |
2627 |
cttgatgacatggcttgctgaaaaaataacacattctgagtggttgatagcaaggacgaatttaaatccgttaaaaagcgacaataaaatagaagcctcc |
2726 |
T |
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| Q |
407 |
ctaagtgaaataatgaaaaatctagaccnnnnnnnttaggtattacctttatatattgttatagatttaacaattgacgtgagtact |
493 |
Q |
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| T |
2727 |
ctaagtgaaataatgaaaaatctagaccaaaaaaattaggtattacctttatatattgttatagatttaacaattgacgtgagtact |
2813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 36318738 - 36318654
Alignment:
| Q |
247 |
ataaccgaaaaagaaatagaaaaaggtatttgactgatagaagagataaaatgtattgaccttgatgacatggcttgttgaaaaaa |
332 |
Q |
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| T |
36318738 |
ataaccgaaaaagaaaaagaaat-ggtgtttgaccgatgggagagataaaatgtattgactttgatgacatagcttgttgaaaaaa |
36318654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 24239114 - 24239015
Alignment:
| Q |
288 |
agagataaaatgtattgaccttgatgacatggcttgttgaaaaaataacacattctgagtggttgatagcaaggacgaatttaaatccgttaaaaagcga |
387 |
Q |
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| T |
24239114 |
agagataaaatg-atcgactttgatgacatgacttgttgaaaaaataccgtcttctgatttgttgagagcagtgacaaatttaagtccgttaaaaagcga |
24239016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 46977338 - 46977308
Alignment:
| Q |
182 |
cttaatcgaccatgtaataataaaaagattt |
212 |
Q |
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| T |
46977338 |
cttaatcgaccatgtaataataaaaagattt |
46977308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2059 - 2112
Alignment:
| Q |
50 |
ccatcaacaaaccaaacattatta-tagagatagtagagttaacaatagttcat |
102 |
Q |
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| T |
2059 |
ccatcaacaaaccacacattattaatagagatagaagagttaccaatagttcat |
2112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 22674364 - 22674415
Alignment:
| Q |
50 |
ccatcaacaaaccaaacattatt-atagagatagtagagttaacaatagttc |
100 |
Q |
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| T |
22674364 |
ccatcaacaaaccacacattattaatagagatagaagagttatcaatagttc |
22674415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 16111123 - 16111070
Alignment:
| Q |
50 |
ccatcaacaaaccaaacattatt-atagagatagtagagttaacaatagttcat |
102 |
Q |
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| T |
16111123 |
ccatcaacaaaccacacattattaatagagatagaagagttgccaatagttcat |
16111070 |
T |
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