View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_4 (Length: 485)
Name: NF4088_low_4
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 45000487 - 45000962
Alignment:
| Q |
17 |
aatagtggagcgggaaacttcttgagataaaaagtagaactttgttttatggtcggttagattcttgttgtgtgctttgacaaaagttaggctagaacca |
116 |
Q |
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| T |
45000487 |
aatagtggagcgggaaacttcttgagataaaaagtagaactttgttttatggtcggttagattcttgttgtgtgctttgacaaaagttaggctagaacca |
45000586 |
T |
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| Q |
117 |
aattaaaggagaaaaagaggcctcacataatcatgcatttggaaatgtatgtgtacacatattgctaatgatgaaaagtaaattaaagagtatatttttt |
216 |
Q |
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| T |
45000587 |
aattaaaggagaaaaagaggcctcacataatcatgcatttggaaatgtatgtgtacacatattgctaatgatgaaaagtaaattaaagagtatatttttt |
45000686 |
T |
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| Q |
217 |
aa-------tatcattctcatgtaatt-------------tctaaagtcgagtaaaaatacaatgaacgacaaaactcttttttaagagatttaatgccg |
296 |
Q |
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| T |
45000687 |
aaaattggttatcattcacatataattttaaagatcaatctcttaagtcgagtaagactataatggacgacaaaactcttttttaagagatttgatgccg |
45000786 |
T |
|
| Q |
297 |
ttgcattctcgtggttgaatttgaattcaagatatctgattacgctaaaagagtctgaatcatattgaatatgtccattttgtgcattgtttcaaaaata |
396 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45000787 |
ttacattctcgtggttgaatttgaattcaagatatctgattacgctaaaagagtctgaatcatattgaatatgtccattttatgcattgtttcaaaaata |
45000886 |
T |
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| Q |
397 |
ttgttttatatggacataggtagtatagtgaaagagtagaattttatagttgattcaagattgaagaaaacctgat |
472 |
Q |
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| T |
45000887 |
ttgttttatatggatataggtagtatagtgaaagagtagaattttatagttgattcaaaattgaagaaaacctgat |
45000962 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 2747140 - 2747088
Alignment:
| Q |
256 |
acaatgaacgacaaaactcttttt-taagagatttaatgccgttgcattctcg |
307 |
Q |
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| T |
2747140 |
acaatgaatgacaaaactctctttctaagagatttaatatcgttgcattctcg |
2747088 |
T |
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