View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4088_low_6 (Length: 443)

Name: NF4088_low_6
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4088_low_6
NF4088_low_6
[»] chr1 (8 HSPs)
chr1 (10-426)||(24435924-24436340)
chr1 (17-329)||(23995142-23995448)
chr1 (20-110)||(23922752-23922842)
chr1 (40-110)||(25803204-25803274)
chr1 (25-117)||(23915096-23915188)
chr1 (35-110)||(23989837-23989912)
chr1 (221-342)||(23914877-23914998)
chr1 (63-110)||(5253011-5253058)
[»] chr4 (1 HSPs)
chr4 (13-347)||(13435761-13436089)
[»] chr5 (2 HSPs)
chr5 (35-342)||(35074590-35074891)
chr5 (75-348)||(35079553-35079823)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 24436340 - 24435924
Alignment:
Q  10 catcatcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24436340 catcatcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaac 24436241  T
Q  110 atcaagccctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaa 209  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24436240 atcaagccctaacttgtataaaagtgtatgtaaagaaactaataaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaa 24436141  T
Q  210 attacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24436140 attacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatga 24436041  T
Q  310 agcaaaagtatccttcttctcaaaccatcaaaggatgcgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgactattcggaaac 409  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24436040 agaaaaagtatccttcttctcaaaccatcaaaggatgtgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgagtattcggaaac 24435941  T
Q  410 tataagcttggatgttg 426  Q
    |||||||||||||||||    
T  24435940 tataagcttggatgttg 24435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 23995142 - 23995448
Alignment:
Q  17 atcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagc 116  Q
    |||| |||||||||||||||||||||||||| ||||| |||| || || |||||||| ||| |||| ||| ||||||| |||||| |  ||| |||||||    
T  23995142 atcactaacaaaagaaagaatgacaccttcatcatatttatctttgtttctcaccatttcagtgatttttttttctcatgccattcctgcaaaatcaagc 23995241  T
Q  117 cctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattactt 216  Q
    ||||| |||||  ||||||||||||| ||| ||    |  ||||       | ||||||||  ||| |||||   |||||| ||||||| ||||||||||    
T  23995242 cctaagttgtaccaaagtgtatgtaaggaatctcgccacaaagat------tttgaacaacgctgcttgaaaacattagaagcctaccctcaaattactt 23995335  T
Q  217 ctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaa 316  Q
    |  || |||||||||| || ||||| ||||||| | ||| ||||||||||||| | ||||||  |||||| |||||||||||||||||||||||| | ||    
T  23995336 cgaccgaagattatcttacattttccagattatatctaaagattgtggcaataaagaatgcaggaaaagctcaacatcaagtcaaagaaatgaagaacaa 23995435  T
Q  317 gtatccttcttct 329  Q
     || |||||||||    
T  23995436 atacccttcttct 23995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 23922842 - 23922752
Alignment:
Q  20 attaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca 110  Q
    |||||||||||| | |||| || ||||| | ||| ||||| | ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  23922842 attaacaaaagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaaca 23922752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 25803274 - 25803204
Alignment:
Q  40 caccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca 110  Q
    |||||||||||||| |||| || ||||||||||| |||||||| ||||||||||| || ||||||||||||    
T  25803274 caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaaca 25803204  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 23915188 - 23915096
Alignment:
Q  25 caaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagcc 117  Q
    ||||||| | |||| || ||||||| ||| ||||| | ||||||||||| ||||||||||||||||| || |||| |||||||||| ||||||    
T  23915188 caaaagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaacaccaagcc 23915096  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 23989837 - 23989912
Alignment:
Q  35 aatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca 110  Q
    |||||| | |||| ||||| ||||||| || |||||||| ||||||| |||||||||||| |||||||||||||||    
T  23989837 aatgactctttcatcatatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaaca 23989912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 23914998 - 23914877
Alignment:
Q  221 caaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaagtat 320  Q
    |||||||||||| || ||||  || | |||||||| ||||| |||||||   || |||| |||| ||||||| ||||| |||||||| | | |||| |||    
T  23914998 caaagattatcttaccttttgcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatat 23914899  T
Q  321 ccttcttctcaaaccatcaaag 342  Q
    |||||||||||| |||||||||    
T  23914898 ccttcttctcaacccatcaaag 23914877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 5253011 - 5253058
Alignment:
Q  63 ttgctcaccatatcaatgatctttatttctcacgccatttcaccaaca 110  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  5253011 ttgctcaccatttcaatgatctctatttctcatgccatttcaccaaca 5253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 13435761 - 13436089
Alignment:
Q  13 catcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatc 112  Q
    |||||||||||||| |||| || ||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13435761 catcatcattaacataagagaggatggcaccttccacaaatttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacgaacatc 13435860  T
Q  113 aagccctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaatt 212  Q
    ||||||||||||||| ||||||||||||||||||| |  |||  ||      | |||||||||||||||| |||||||||||||| ||||||||||||||    
T  13435861 aagccctaatttgtacaaaagtgtatgtaaagaaattggtaaggaa------ccctatgaacaaccttgcttgaaacttttagaaacctacccacaaatt 13435954  T
Q  213 acttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagc 312  Q
    ||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |     
T  13435955 acttcagccatagattatcttaccttttcaagattatttttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacga 13436054  T
Q  313 aaaagtatccttcttctcaaaccatcaaaggatgc 347  Q
    |||| ||||| ||||||||| ||||||||||||||    
T  13436055 aaaaatatccctcttctcaagccatcaaaggatgc 13436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 342
Target Start/End: Complemental strand, 35074891 - 35074590
Alignment:
Q  35 aatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagccctaatttgtataaaagt 134  Q
    |||| |||||||||||||  ||||||| ||  |||  || |||||||||||||||| ||| ||| ||||||||||| |||||||||| |||||  || ||    
T  35074891 aatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttcaccaacaccaagccctaagttgtacgaacgt 35074792  T
Q  135 gtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaa 234  Q
     |||| |||||| ||  | || |||||      | |||||||| ||| || |||||| ||||| | ||||| ||||||||||    | ||||||||||||    
T  35074791 atatgcaaagaatctggtcaaaaagac------tttgaacaacgttgtctcaaacttatagaagcttaccctcaaattactttgatcgaagattatctaa 35074698  T
Q  235 ctttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaagtatccttcttctcaaac 334  Q
    ||||||  || | |||||||| ||||||||||||| | || |||  |||| ||||||| ||||| ||||| || | | | || ||||||||||||||| |    
T  35074697 ctttttgcaggtcatttttaaagattgtggcaatagagaaggcagtaaaatcccaacaacaagttaaagagattatgaacaaatatccttcttctcaacc 35074598  T
Q  335 catcaaag 342  Q
    ||||||||    
T  35074597 catcaaag 35074590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 348
Target Start/End: Complemental strand, 35079823 - 35079553
Alignment:
Q  75 tcaatgatctttatttctcacgccatttcac---caacatcaagccctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatg 171  Q
    ||||||||||||||||| || ||||||||||   ||||| ||||||| || ||||| |||||||||||||||||| ||  | |  |||      | |  |    
T  35079823 tcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaag------aattcg 35079730  T
Q  172 aacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaataca 271  Q
    |||||| ||| || |||||| ||||| | |||||  ||||||| |    ||||||||||||||| ||||  || |  ||||||| || |||||||||| |    
T  35079729 aacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttttaaagactgtggcaataaa 35079630  T
Q  272 taatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaagtatccttcttctcaaaccatcaaaggatgcg 348  Q
     || |||| |||| ||||||||| ||||||||||||   | |||| ||||||||||||||| | ||||||| |||||    
T  35079629 gaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatgcg 35079553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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