View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4088_low_9 (Length: 415)
Name: NF4088_low_9
Description: NF4088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4088_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 99 - 400
Target Start/End: Complemental strand, 46702451 - 46702152
Alignment:
| Q |
99 |
taatttaggcataaacataagaaacgagtattacacaccagataaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttg |
198 |
Q |
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| T |
46702451 |
taatttaggcataaacataagaaacgagtattacaccccagataaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttg |
46702352 |
T |
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| Q |
199 |
cttccagttgtgcagcagggtcgtccgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaacattaagagtaaacgacattaaggg |
298 |
Q |
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| T |
46702351 |
cttccagttgtgcagcagggtcgtccgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaaggg |
46702252 |
T |
|
| Q |
299 |
tcgtccgacatgcattatatgtagctctaactctaaaatggacttcttttttctttctctcaatagaattctgataaagcctcttatattggcaattggt |
398 |
Q |
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| T |
46702251 |
tcgtccgacatgcattatatgtagctctaactctaaaatggactttttttttc--tctctcaatagaattctgataaagcctcttatattggcaattggt |
46702154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 100 - 311
Target Start/End: Complemental strand, 46129664 - 46129454
Alignment:
| Q |
100 |
aatttaggcataaacataagaaacgagtattacacaccagataaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttgc |
199 |
Q |
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| T |
46129664 |
aatttaggcataa-cataagaaacgagtaaaacaccccaggtaaaatacaaccactacattcataccccctgacagtagctttccaaactgagtagctgc |
46129566 |
T |
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| Q |
200 |
ttccagttgtgcagcagggtcgtccgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaacattaagagtaaacgacattaagggt |
299 |
Q |
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| T |
46129565 |
ttccagttgtgcagcagggtcgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggtt |
46129466 |
T |
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| Q |
300 |
cgtccgacatgc |
311 |
Q |
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| T |
46129465 |
catccgacatgc |
46129454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 124 - 286
Target Start/End: Complemental strand, 46123614 - 46123452
Alignment:
| Q |
124 |
gagtattacacaccagataaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtc |
223 |
Q |
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| T |
46123614 |
gagtattacatcccaaataaaatataatgattacattcataccccctgatagtagctttccaaactgagtagttgcttcaagttgtgcagcagggtcgtt |
46123515 |
T |
|
| Q |
224 |
cgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaacattaagagtaaa |
286 |
Q |
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|||| |||| || || |||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
46123514 |
agacaataaggccagtgtcattgcaggaatggttttcacctgttaaacaacattaagagtaaa |
46123452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 46702611 - 46702522
Alignment:
| Q |
11 |
cacagatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctata |
100 |
Q |
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| T |
46702611 |
cacagatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctata |
46702522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 46129447 - 46129345
Alignment:
| Q |
289 |
acattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggacttcttttttctttctctcaatagaattctgataaagcctcttatatt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||| |||| ||||||||| |||||||||||||||| |
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| T |
46129447 |
acattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccttttttt--------tcaacagaattctgttaaagcctcttatatt |
46129356 |
T |
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| Q |
389 |
ggcaattggta |
399 |
Q |
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||||||||||| |
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| T |
46129355 |
ggcaattggta |
46129345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 46129812 - 46129737
Alignment:
| Q |
26 |
aaatgttcaaa-tttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctata |
100 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
46129812 |
aaatgttcaaaatttggttaaaaattaagaacttatgtgcaccacatcatgatttaggaaaacacatacgcctata |
46129737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 46123790 - 46123725
Alignment:
| Q |
26 |
aaatgttcaaa-tttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacaca |
90 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
46123790 |
aaatgttcaaaatttggttaaaaattaagaacttatgagaactacatcatgatttagggaaacaca |
46123725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 46123395 - 46123350
Alignment:
| Q |
305 |
gacatgcattatatgtagctctaactctaaaatggacttctttttt |
350 |
Q |
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||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacctttttttt |
46123350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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