View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4089_high_3 (Length: 374)
Name: NF4089_high_3
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_high_3 |
 | |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 14786552 - 14786909
Alignment:
| Q |
1 |
atgatttcaaagttggtgtgttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaacca |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14786552 |
atgatttcaaagtcggtgtgttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaacca |
14786651 |
T |
|
| Q |
101 |
tgtcgtctaagggaatgacggttcatttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctc |
200 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14786652 |
tgtcgtctaagggaatgaccgttcctttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctc |
14786751 |
T |
|
| Q |
201 |
tctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgctaattgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14786752 |
tctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaaggcacttaagaatttaaataaacctgatgagtcgctaattgta |
14786851 |
T |
|
| Q |
301 |
tggtttagacgaagagcaaatatgaaaccaccacacttgagacgcgttacctgcatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14786852 |
tggtttagacgaagagcaaatatgaaaccaccacacttgagacgcgttacctgcatat |
14786909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 354
Target Start/End: Complemental strand, 14759295 - 14758980
Alignment:
| Q |
39 |
cggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtgg |
137 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||| | ||||| |||||| ||| || |
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|
| T |
14759295 |
cggaaggagagagcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-gg |
14759197 |
T |
|
| Q |
138 |
tacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcatt |
237 |
Q |
| |
|
| || || ||||| |||||||||| || | | ||||||| | ||||||||| ||||||||||| | |||||| |||||||||||||||| |||| |
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|
| T |
14759196 |
ttctggatcgtattcacgatgagtacatgtcactattggtggatcccttgcattaagaagctctctgctccacactggtgagattgaaggtttactcatc |
14759097 |
T |
|
| Q |
238 |
ccgcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacact |
337 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||| || | ||||||| || || ||||||||||| | ||| | |||||| |||||||||||||||| |
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| T |
14759096 |
ccacgagatatttctcctaaggcattcaagaattgaagcatacctgatccatcactcattgtatggttcatacggaaagcaaaaatgaaaccaccacact |
14758997 |
T |
|
| Q |
338 |
tgagacgcgttacctgc |
354 |
Q |
| |
|
|||| || ||||||||| |
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|
| T |
14758996 |
tgaggcgtgttacctgc |
14758980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 355
Target Start/End: Original strand, 14878445 - 14878760
Alignment:
| Q |
40 |
ggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtggt |
138 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||| | ||||| |||||| ||| ||| |
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|
| T |
14878445 |
ggaaggagagtgcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-ggt |
14878543 |
T |
|
| Q |
139 |
acttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattc |
238 |
Q |
| |
|
|| || ||||| ||||| || | || | ||||||||| | ||||||||| ||||||||||| | ||||||||||||||||||||||| | |||| | |
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| T |
14878544 |
tctggatcgtattcacgatgattatatgtcactcttggtggatcccttgcattaagaagctctctgctccacaccggtgagattgaaggtttgctcatcc |
14878643 |
T |
|
| Q |
239 |
cgcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacactt |
338 |
Q |
| |
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| |||||||| ||||||||||| || ||||||| || | || |||| || || | ||||||||| | ||||| |||||| || |||||||||||||| |
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|
| T |
14878644 |
cacgagatatctctcctaaggcactcaagaattgaagcatgcccgatgcatcactcaatgtatggttcatacgaatagcaaagataaaaccaccacactt |
14878743 |
T |
|
| Q |
339 |
gagacgcgttacctgca |
355 |
Q |
| |
|
||| || |||||||||| |
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|
| T |
14878744 |
gaggcgtgttacctgca |
14878760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 358
Target Start/End: Original strand, 14767523 - 14767820
Alignment:
| Q |
61 |
gctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtggtacttcttcatattcgtgatga |
159 |
Q |
| |
|
||||||||||| ||||| ||||| |||| | ||||| ||||||| ||||||||||| | |||| |||| | ||| || |||| ||| ||||| ||||| |
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|
| T |
14767523 |
gctacctcggttggaccgaagaaaaaagagcgatgagccatgtcatctaagggaataattgttcctttggtgtcg-ggaacttgttcgtattcacgatga |
14767621 |
T |
|
| Q |
160 |
gtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaagg |
259 |
Q |
| |
|
|| || || | ||| ||||| | ||||| |||||||||||| ||| ||| |||||| ||||||||||||| ||||| |||| ||| ||||| ||||||| |
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|
| T |
14767622 |
gtgcatgttactctcggtggatcccttgaatttagaagctccctatgccataccggtaagattgaaggttcattcatcccgcaagaaatttcacctaagg |
14767721 |
T |
|
| Q |
260 |
cgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacacttgagacgcgttacctgcatat |
358 |
Q |
| |
|
| || | ||||| | ||||| | || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||| ||||| |
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|
| T |
14767722 |
cactcatgaattggaccaaacccgctgcatcgctcattgtatggtttagacgaagagcaaaaatgaaaccaccgcacttgaggcgtgttacctacatat |
14767820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 355
Target Start/End: Original strand, 14873682 - 14873898
Alignment:
| Q |
139 |
acttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattc |
238 |
Q |
| |
|
|||| ||||||||| |||||||| || || | ||||||||| | |||||| ||||||||||||||| ||| || |||||||||||||||| |||||| | |
|
|
| T |
14873682 |
acttgttcatattcatgatgagtgcatgttactcttggtggatcccttgcgtttagaagctctctatgccatactggtgagattgaaggtttgttcatcc |
14873781 |
T |
|
| Q |
239 |
cgcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacactt |
338 |
Q |
| |
|
| || || |||| |||||||| | | ||||| | ||||| | | ||| || || ||||||||||||||||||||||| ||||||||||| || || |
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|
| T |
14873782 |
cacgtgaaattttgcctaaggcattcatgaattggaccaaaccagcagcgtcactcatcgtatggtttagacgaagagcaaaaatgaaaccaccgcattt |
14873881 |
T |
|
| Q |
339 |
gagacgcgttacctgca |
355 |
Q |
| |
|
| ||| |||||||||| |
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|
| T |
14873882 |
caaacgtgttacctgca |
14873898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 355
Target Start/End: Original strand, 84506 - 84821
Alignment:
| Q |
40 |
ggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtttcgtggta |
139 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | |||||||||||||| || || |||||||| ||||||| || | || |||||| ||| |
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|
| T |
84506 |
ggaagtagagaacgaattgcggctacctcggttgcaccaaagaagaaagcatggtggaccatgtcatctaaggaaaatgtgtttgctttgttgtcaggtt |
84605 |
T |
|
| Q |
140 |
cttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattcc |
239 |
Q |
| |
|
|| ||| ||||| ||||||||||||| | |||||||| | |||||| |||||| ||||| |||||||| |||||||||||||||| |||| || |
|
|
| T |
84606 |
ctggttcgtattcacgatgagtacacgtcactcttggtgcatcccttgcgcttagaatttctctgcaccacactggtgagattgaaggttttctcatacc |
84705 |
T |
|
| Q |
240 |
gcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacacttg |
339 |
Q |
| |
|
||||||||||| |||| || || | ||||| || || ||||||| || | ||||||||||| | |||||||||||| |||||||| | ||| ||| |
|
|
| T |
84706 |
ctgagatatttctgctaaagcactcatgaattgaactatacctgatccatcagtcattgtatggttgaaacgaagagcaaaaatgaaacctctacatttg |
84805 |
T |
|
| Q |
340 |
agacgcgttacctgca |
355 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
84806 |
aggcgtgttacctgca |
84821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 12000090 - 12000161
Alignment:
| Q |
40 |
ggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaag |
111 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||| | || | |||||| |||||| |
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|
| T |
12000090 |
ggaaggagagtacgaattggcgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaag |
12000161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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