View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4089_high_5 (Length: 252)

Name: NF4089_high_5
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4089_high_5
NF4089_high_5
[»] chr4 (30 HSPs)
chr4 (1-240)||(48898519-48898758)
chr4 (112-228)||(49041203-49041319)
chr4 (112-228)||(48863140-48863256)
chr4 (176-228)||(48147756-48147808)
chr4 (68-160)||(48852530-48852622)
chr4 (183-230)||(48870539-48870586)
chr4 (183-230)||(48875843-48875890)
chr4 (183-230)||(48886225-48886272)
chr4 (68-162)||(48891279-48891373)
chr4 (177-234)||(45384901-45384958)
chr4 (114-228)||(45372111-45372231)
chr4 (176-236)||(48705390-48705450)
chr4 (180-228)||(48735421-48735469)
chr4 (43-94)||(45366400-45366451)
chr4 (183-237)||(48170592-48170646)
chr4 (183-240)||(48852663-48852720)
chr4 (67-162)||(48170694-48170789)
chr4 (112-154)||(48870453-48870495)
chr4 (112-154)||(48886139-48886181)
chr4 (112-161)||(48875757-48875806)
chr4 (187-235)||(49044219-49044267)
chr4 (184-239)||(7773845-7773900)
chr4 (109-160)||(33133930-33133981)
chr4 (177-236)||(45366237-45366296)
chr4 (114-161)||(49044311-49044358)
chr4 (115-154)||(50672412-50672451)
chr4 (186-239)||(7908325-7908378)
chr4 (112-161)||(48147832-48147881)
chr4 (183-228)||(48156460-48156505)
chr4 (183-239)||(50250809-50250865)
[»] chr5 (4 HSPs)
chr5 (112-228)||(42562379-42562495)
chr5 (177-240)||(29696197-29696260)
chr5 (177-226)||(179025-179074)
chr5 (114-151)||(29688024-29688061)
[»] chr8 (5 HSPs)
chr8 (176-240)||(15348846-15348910)
chr8 (114-162)||(4032024-4032072)
chr8 (177-235)||(4031933-4031991)
chr8 (183-236)||(12200304-12200357)
chr8 (183-236)||(12444732-12444785)
[»] chr1 (2 HSPs)
chr1 (112-228)||(24367073-24367189)
chr1 (115-240)||(24310097-24310225)
[»] chr6 (1 HSPs)
chr6 (63-164)||(21015668-21015769)
[»] chr3 (5 HSPs)
chr3 (189-236)||(47451938-47451985)
chr3 (183-239)||(11015544-11015600)
chr3 (115-154)||(47452029-47452068)
chr3 (183-240)||(11005980-11006037)
chr3 (183-240)||(11024555-11024612)
[»] chr7 (2 HSPs)
chr7 (114-152)||(30120435-30120473)
chr7 (183-240)||(48883798-48883855)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48898519 - 48898758
Alignment:
Q  1 catttatcgatgattctgcttatgcaaaccatacttttttgccttattctgatcttcaactcaaatgttcatgtagaggctttatacttttgcatacttg 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48898519 catttatcgatgattctgcttatgcaaatcatacttttttgccttattctgatcttgaactcaaatgttcatgtagaggctttatacttttgcatacttg 48898618  T
Q  101 ctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48898619 ctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttgtctcctaatcatttttctttatatttctatggttttgggtatgat 48898718  T
Q  201 cagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  48898719 cagttaacagatgattacttagtggttttattgtcctatg 48898758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 49041319 - 49041203
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 211  Q
    |||||||||| |||||||||||||||||||||| |||||||||  |||||||||||  ||  ||| |||||||||||||||||||||||| || ||||||    
T  49041319 acctatggaacccatccaccggagctcacaaactaatacctttgcctcctaatcatgattacttaaatttctatggttttgggtatgatccgtcaacaga 49041220  T
Q  212 tgattacttggtggttt 228  Q
    |||||||||| ||||||    
T  49041219 tgattacttgatggttt 49041203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 48863140 - 48863256
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 211  Q
    |||||||||||||||||||||||||||| |||||||||||||   |||||||| ||| || |||| |||||   |||||||||||||||| || |  |||    
T  48863140 acctatggaatccatccaccggagctcagaaacaaataccttcgcctcctaatgattattatttaaatttcgccggttttgggtatgatccgtcagaaga 48863239  T
Q  212 tgattacttggtggttt 228  Q
    |||||||||||||||||    
T  48863240 tgattacttggtggttt 48863256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 48147808 - 48147756
Alignment:
Q  176 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttt 228  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  48147808 atattactatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 48852530 - 48852622
Alignment:
Q  68 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctcc 160  Q
    ||||||||||||||||||| |||||||   ||  ||||| ||  | |||||||||||||||||||||| |||||||||||||||||| |||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtctcc 48852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 48870539 - 48870586
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 230  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggtttta 48870586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 48875843 - 48875890
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggtttta 48875890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 48886225 - 48886272
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggtttta 230  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggtttta 48886272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 48891279 - 48891373
Alignment:
Q  68 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 162  Q
    |||||||||||| ||| ||||||||||||||  |||| | ||| |  |||||||||||||||| |||  |||||||||||||||||| |||||||    
T  48891279 ttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctccta 48891373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 45384958 - 45384901
Alignment:
Q  177 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgt 234  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  45384958 tatttctatggttttgggtatgatcagtcaacaaatgattatttggtggtttcaatgt 45384901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 45372231 - 45372111
Alignment:
Q  114 ctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttt---tctttatattt---ctatggttttgggtatgatcagttaa 207  Q
    ||||||||||||||||| || | ||| |||||||||||||| ||||||||| ||| |   | ||| ||||    |||||| |||||||||||| ||||||    
T  45372231 ctatggaatccatccactggtgttcagaaacaaatacctttttctcctaattattctcaatatttctattatccctatggatttgggtatgatgagttaa 45372132  T
Q  208 cagatgattacttggtggttt 228  Q
     ||||||||||||||||||||    
T  45372131 gagatgattacttggtggttt 45372111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 48705450 - 48705390
Alignment:
Q  176 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 236  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||| |||| |||||||    
T  48705450 atatttccatggttttggatatgatcagtcaacagatgattacttggttgtttcaatgtcc 48705390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  180 ttctatggttttgggtatgatcagttaacagatgattacttggtggttt 228  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 45366451 - 45366400
Alignment:
Q  43 cttattctgatcttcaactcaaatgttcatgtagaggctttatacttttgca 94  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  45366451 cttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 48170646 - 48170592
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcct 237  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcct 48170592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 48852663 - 48852720
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    ||||||||||||||||| | || ||| |||||||||||||| ||||||||||||||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatg 48852720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 48170789 - 48170694
Alignment:
Q  67 gttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 162  Q
    |||| ||||||||||||||| ||||||||  |   |||  | || |||||||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  48170789 gttcctgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctccta 48170694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 48870453 - 48870495
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaataccttt 154  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  48870453 acctatggaatccatccaccggatttcacaaacaaataccttt 48870495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 48886139 - 48886181
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaataccttt 154  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  48886139 acctatggaatccatccaccggatttcacaaacaaataccttt 48886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 48875757 - 48875806
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcct 161  Q
    |||||||||||||||||||||||  |||||||||||||||| | ||||||    
T  48875757 acctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 49044267 - 49044219
Alignment:
Q  187 gttttgggtatgatcagttaacagatgattacttggtggttttaatgtc 235  Q
    ||||||||||||||| || |||||||||||| ||||||||||| |||||    
T  49044267 gttttgggtatgatccgtcaacagatgattatttggtggttttgatgtc 49044219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 7773900 - 7773845
Alignment:
Q  184 atggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 239  Q
    |||||||||| ||||| ||| ||| ||||||||||||||||||| || ||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcctat 7773845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 33133981 - 33133930
Alignment:
Q  109 tccacctatggaatccatccaccggagctcacaaacaaatacctttatctcc 160  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||| |||||    
T  33133981 tccacctatggaatccattcacccgagttcataaacaaatacctttgtctcc 33133930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 45366296 - 45366237
Alignment:
Q  177 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 236  Q
    ||||||||||||||| ||||||| |  |||||||||||||| ||||| |||| |||||||    
T  45366296 tatttctatggtttttggtatgacccattaacagatgattatttggttgtttcaatgtcc 45366237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 49044358 - 49044311
Alignment:
Q  114 ctatggaatccatccaccggagctcacaaacaaatacctttatctcct 161  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||||    
T  49044358 ctatggaatccatccactagagttcacaaacaaatacctttgtctcct 49044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  115 tatggaatccatccaccggagctcacaaacaaataccttt 154  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 7908325 - 7908378
Alignment:
Q  186 ggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 239  Q
    |||||||| ||||| |||| || |||||||||||||||||||| | ||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 48147881 - 48147832
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcct 161  Q
    |||| ||||||||||||||||||||| ||||  |||||||||| ||||||    
T  48147881 acctgtggaatccatccaccggagctaacaagaaaatacctttgtctcct 48147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 48156505 - 48156460
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttt 228  Q
    ||||| |||||||||||||| |||| ||||||||||||||| ||||    
T  48156505 tatggatttgggtatgatcaattaagagatgattacttggtagttt 48156460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 50250865 - 50250809
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 239  Q
    ||||||||||| ||||| || | |||||||||||| |||||||||| ||| ||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 42562495 - 42562379
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 211  Q
    |||||||||||||||||| ||||  |||||||||||||||||| ||||||| | ||| |  |||  |||| |||||||||||||||||||| | |||| |    
T  42562495 acctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaaa 42562396  T
Q  212 tgattacttggtggttt 228  Q
    |||||| || |||||||    
T  42562395 tgattatttagtggttt 42562379  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 29696197 - 29696260
Alignment:
Q  177 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||| ||| |||||||||||    
T  29696197 tatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatg 29696260  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 179025 - 179074
Alignment:
Q  177 tatttctatggttttgggtatgatcagttaacagatgattacttggtggt 226  Q
    |||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  179025 tatttctatggttttgggtatgaggagtcaacagatgattacttgttggt 179074  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 29688024 - 29688061
Alignment:
Q  114 ctatggaatccatccaccggagctcacaaacaaatacc 151  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  29688024 ctatggaatccatccaccggagttcacagacaaatacc 29688061  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 15348846 - 15348910
Alignment:
Q  176 atatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    |||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||||||||||    
T  15348846 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatg 15348910  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 4032072 - 4032024
Alignment:
Q  114 ctatggaatccatccaccggagctcacaaacaaatacctttatctccta 162  Q
    ||||||||| ||||||  |||| ||||||||||||||||||||||||||    
T  4032072 ctatggaattcatccattggagttcacaaacaaatacctttatctccta 4032024  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 4031991 - 4031933
Alignment:
Q  177 tatttctatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtc 235  Q
    ||||| ||||||||||||||||| |||| |||| |||| ||| ||||||||| ||||||    
T  4031991 tatttatatggttttgggtatgaccagtcaacaaatgactacctggtggtttcaatgtc 4031933  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 12200304 - 12200357
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 236  Q
    ||||||||||| ||||| | || || |||||||||||||||||||||| |||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 12444732 - 12444785
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 236  Q
    ||||||||||| ||||| | || || |||||||||||||||||||||| |||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 24367073 - 24367189
Alignment:
Q  112 acctatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 211  Q
    |||||||||| ||||||||| ||| ||| |  ||| |||||||  ||| ||||||||| | |  | ||||||||||||||||||||||  ||| ||||||    
T  24367073 acctatggaacccatccaccagagttcataggcaattacctttgcctcttaatcatttatatgcagatttctatggttttgggtatgacaagtcaacaga 24367172  T
Q  212 tgattacttggtggttt 228  Q
    |||||||||||||||||    
T  24367173 tgattacttggtggttt 24367189  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 24310097 - 24310225
Alignment:
Q  115 tatggaatccatccaccggagctcacaaacaaatacctttatctcctaatcatttttc---tttatatttctatggttttgggtatgatcagttaacaga 211  Q
    ||||||||||||||||||||| ||| | |||||||||||   |||||    ||| |||   |||| |||||||||||||||| |||||  ||| || |||    
T  24310097 tatggaatccatccaccggagttcatagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagaga 24310196  T
Q  212 tgattacttggtggttttaatgtcctatg 240  Q
    |||||||||||| |||||| | |||||||    
T  24310197 tgattacttggtagttttagtatcctatg 24310225  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 21015668 - 21015769
Alignment:
Q  63 aaatgttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttatctccta 162  Q
    ||||||||||||||||| |||||| |||||||   |   ||| | ||| |||||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  21015668 aaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T
Q  163 at 164  Q
    ||    
T  21015768 at 21015769  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 47451985 - 47451938
Alignment:
Q  189 tttgggtatgatcagttaacagatgattacttggtggttttaatgtcc 236  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||    
T  47451985 tttgggtatgacgagttaacagatgattacttagtggttttaatgtcc 47451938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 11015600 - 11015544
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctat 239  Q
    ||||||||||||||||| || |||| |||||||||||||||||| | | ||||||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 47452068 - 47452029
Alignment:
Q  115 tatggaatccatccaccggagctcacaaacaaataccttt 154  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  47452068 tatggaatccatccactggagttcacaaacaaataccttt 47452029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 11006037 - 11005980
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    ||||||||||||||||| || | || |||||||||||||||||| | | |||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 11024612 - 11024555
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    ||||||||||||||||| || | || |||||||||||||||||| | | |||||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 11024555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 30120473 - 30120435
Alignment:
Q  114 ctatggaatccatccaccggagctcacaaacaaatacct 152  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30120473 ctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 48883798 - 48883855
Alignment:
Q  183 tatggttttgggtatgatcagttaacagatgattacttggtggttttaatgtcctatg 240  Q
    ||||||||||| ||||| | || || |||||||||| ||||||||| |||||||||||    
T  48883798 tatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatg 48883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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