View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_1 (Length: 856)
Name: NF4089_low_1
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 336 - 842
Target Start/End: Original strand, 56232372 - 56232878
Alignment:
| Q |
336 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232372 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
56232471 |
T |
|
| Q |
436 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232472 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
56232571 |
T |
|
| Q |
536 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgattcattgagaattactctatctgataatatgatgtgtt |
635 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232572 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattatgatatgattcattgagaattactctatctgataatatgatgtgtt |
56232671 |
T |
|
| Q |
636 |
ttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagacc |
735 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232672 |
ttctttcagctaggacaagggacaacactcacaaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagacc |
56232771 |
T |
|
| Q |
736 |
aaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatg |
835 |
Q |
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| T |
56232772 |
aaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatg |
56232871 |
T |
|
| Q |
836 |
ttctctg |
842 |
Q |
| |
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||||||| |
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| T |
56232872 |
ttctctg |
56232878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 56232050 - 56232326
Alignment:
| Q |
18 |
caacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaacaaagttgaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232050 |
caacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaacaaagttgaac |
56232149 |
T |
|
| Q |
118 |
ataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggt----ctattctttcattattaatttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
56232150 |
ataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggtttgcctattctttcattattaatttc |
56232249 |
T |
|
| Q |
214 |
aaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaaattacacgagttagtcgtag |
290 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
56232250 |
aaacattgcgtcataaatcatactacatattttgtttcctaacttagtattttccaaattacacgagttggtcgtag |
56232326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 336 - 598
Target Start/End: Original strand, 39190187 - 39190449
Alignment:
| Q |
336 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
435 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |
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| T |
39190187 |
agccagatgtaaccgcacccggtgtgaacattattgctgcctactcaggagcggttagtcccacaaaattggattctgataaacgtagggttcctttcat |
39190286 |
T |
|
| Q |
436 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
535 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
39190287 |
gacaatgtctggaacatccatgtcatgccctcatgtggctggagtcgttggccttcttaagactctccaccccacctggagtccatcagctattaaatct |
39190386 |
T |
|
| Q |
536 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgat |
598 |
Q |
| |
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|||||||||||||||||||||| | ||||| | |||| ||||||||| ||| || ||||||| |
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| T |
39190387 |
gcaatcatgacaactggtaagtaatgtaacatcattagattactcatgaaatgatgatatgat |
39190449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 619 - 840
Target Start/End: Original strand, 39190602 - 39190823
Alignment:
| Q |
619 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggt |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||| |||||| |
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| T |
39190602 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactgttaaacctatcgttgatgatattaatgtcaaggcaacaccatttgactacggt |
39190701 |
T |
|
| Q |
719 |
tctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataacc |
818 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
39190702 |
tctggtcacataagaccaaatcgtgccatggatcctggtttggtgtatgagttaaacatcaatgattacataaactttctttgtttcttaggttataacc |
39190801 |
T |
|
| Q |
819 |
aagcacaaattactatgttctc |
840 |
Q |
| |
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|| ||||||||| |||||||| |
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| T |
39190802 |
aaacacaaattagcatgttctc |
39190823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 39189845 - 39190098
Alignment:
| Q |
18 |
caacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaacaaagttgaac |
117 |
Q |
| |
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||||||||||||||||||||| | |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39189845 |
caacattgttctcttaacaccgt-----taattaatgtcgttattatcatataataggaatccactaggatatattcatccacccacaacaaagttgaaa |
39189939 |
T |
|
| Q |
118 |
ataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggt----ctattctttcattattaatttc |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39189940 |
ataaaacctgctccaagcatggcggtcttctcctctagagggcctaacacaatcacaccagagatcctcaaggtttgcctattctttcattattaatttc |
39190039 |
T |
|
| Q |
214 |
aaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaaatt |
273 |
Q |
| |
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||||| || |||| ||||||| || |||||||| ||||||||| | |||||||||||||| |
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| T |
39190040 |
aaaca-tgtgtcacaaatcatactacatattttatttcctaacatggtattttccaaatt |
39190098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 39218756 - 39218836
Alignment:
| Q |
190 |
gtctattctttcattattaatttcaaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| || |||||||| ||||||||| ||||||||||||| |
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|
| T |
39218756 |
gtctattctttcattattaatttcaaacattgtgtcacaaatcatactacatattttatttcctaacatagtattttccaa |
39218836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 11096813 - 11096751
Alignment:
| Q |
68 |
ataacaggaatccactaggatatattcatccacccacaacaaagttgaacataaaacctgctc |
130 |
Q |
| |
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|||||| ||||||||||||||| |||||||||| | |||||||||||| |||||| ||||||| |
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|
| T |
11096813 |
ataacaagaatccactaggatacattcatccactctcaacaaagttgagcataaagcctgctc |
11096751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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