View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_10 (Length: 275)
Name: NF4089_low_10
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 28537155 - 28537353
Alignment:
| Q |
1 |
aataaatatagaaaataaaaataatgttccaataagggactttatgtttgagtagacagaaatattccgataactctagcttttatatgtcacaatcttt |
100 |
Q |
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| T |
28537155 |
aataaatataaaaaataaaaataatgttccaataagggactttatgtttgagtagacagaaatattccgataactctagcttttatatgtcacaatcttt |
28537254 |
T |
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| Q |
101 |
ataactgtttgggatcaattatcattattgatgtaattcactcaatgtgatgattacttaaaggcactaatataattcaacttctcatattctaccatct |
200 |
Q |
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| T |
28537255 |
c--actgtttgggatcaattatcattattgatgtaattcactcaatgtgatgattacttaaaggcactaatataattcaacttctcatattctaccatct |
28537352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 28537372 - 28537429
Alignment:
| Q |
187 |
atattctaccatcttattccttcaaaagaaaaatatatatattctaccatcttatgttatt |
247 |
Q |
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| T |
28537372 |
atattctaccatcttattccttcaaaaaaaaaa---aaaaaatctaccatcttatgttatt |
28537429 |
T |
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