View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_2 (Length: 687)
Name: NF4089_low_2
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 11399059 - 11399349
Alignment:
| Q |
19 |
acatctgcatccgccacatttagatcttcaccttcattcacggactcatacgatctgagaaagaaatgaagaacaagtcatgaagaaatcatgaagaaca |
118 |
Q |
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| T |
11399059 |
acatccgcatccgccgcatttagatcttcaccttcattcacggactcatccgatctgaaaaagaaatttagaacatgtcatgaagaaatcgtgaagaaca |
11399158 |
T |
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| Q |
119 |
atcaaccaaaaaagtaaaattataatgaaattgaagttattctattcatgtgactatctcagatagtagaacaagagaaagtataactatgaacaaaatt |
218 |
Q |
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| T |
11399159 |
atcaaccaaaaaagtgaaattataatgaaattgaagttattctattcatgtgactatctcagatactagaacaagagaaagtataactatgaacaaaatt |
11399258 |
T |
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| Q |
219 |
tgnnnnnnnnnnnncaacaaaacaatccaaagttgaaattatagttttaaaatgataacaacagatgtgactatctcaacacaagaatgagagaaa |
314 |
Q |
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| T |
11399259 |
tg-----aaaaaaacaacaaaacaattcaaagttgaaattatagtttgaactcaaaaaatttagatgtgactatctcaacacgagaatgagagaaa |
11399349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 464 - 543
Target Start/End: Original strand, 11399468 - 11399549
Alignment:
| Q |
464 |
tggagaagtgactaactct--ctctctttttcagctgctaattctgtatttgttactagctcagactcagacatcatcttac |
543 |
Q |
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| T |
11399468 |
tggagaagtgactaactctctctctctttttcggctgctaattatgtatttgttactagctcagactcagacatcatcttac |
11399549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 679
Target Start/End: Original strand, 11399634 - 11399685
Alignment:
| Q |
628 |
atgaaataagggtttatgtgttctgtttgttggtgtttcgttctcctttgct |
679 |
Q |
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| T |
11399634 |
atgaaataagggtttatgtgttctgtttgttggtgtttcgttctcctttgct |
11399685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 11399352 - 11399389
Alignment:
| Q |
348 |
ataacaatcggtcaaatagttatgaagttgaaattata |
385 |
Q |
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| T |
11399352 |
ataacaatcagtcaaatagttatgaagttgaaattata |
11399389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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