View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4089_low_4 (Length: 502)
Name: NF4089_low_4
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 489
Target Start/End: Original strand, 33444582 - 33445050
Alignment:
| Q |
21 |
acctgcagagaggcctgtggtgcacttgggttacttgctgatgactgccagtttattgatgcgatcaatgaggttgcacttgattcatccggtcaatttg |
120 |
Q |
| |
|
|||||||||||||| |||| ||| ||||| || |||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
33444582 |
acctgcagagaggcatgtgctgcccttggattgcttgctgatgaccgacagtttattgatgcaatcaacgaggttgcacttgattcatccggtcactttg |
33444681 |
T |
|
| Q |
121 |
ttcggaagatatttgcaaatttgcttttatcttcgtccttaggtgatccatttcctgcctggcaacttacttggcaagctttggctgatggaattctcta |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
33444682 |
ttcggaagatatttgcaaatttgcttctatcttcgtccttaggtgatccatttgctgcttggcaacttacctgggaagctttggctgatggaattctcta |
33444781 |
T |
|
| Q |
221 |
tgataggcgtcgcttactaaatttaccaggtttgtccctcatcattatgttaatcattcaattgttatgcaacggatttaagtcaattatcatgtgtctt |
320 |
Q |
| |
|
|||||||||||| || |||||| |||||||| |||||||| ||||| |||||||||||||||| ||| ||| ||||| ||||| |||||||||| || |
|
|
| T |
33444782 |
tgataggcgtcgattcttaaattcaccaggttcatccctcatgattattttaatcattcaattgtcatgtgacgcatttaggtcaactatcatgtgtttt |
33444881 |
T |
|
| Q |
321 |
ttctaacaagtttcaaaccttcgctttttcttagatttgattatttcggacgaggatttgaagcagctttgtttggttgaaattgacaagttgcttaggt |
420 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
33444882 |
ttctaacgggtttcaaacctttgctttttcttagatttgattatttcggatgaggatttgaagcagctttgtttggttgaaatagacaagcttcttaggc |
33444981 |
T |
|
| Q |
421 |
taaatgggaagaccctaaatgattttgaatccatgcccaagttatcctccactgttgttgatgcctttg |
489 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
33444982 |
taaatgggaagaccctcgatgattttgaatccatgcctaagttattgtccactgttgtttatgcctttg |
33445050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University