View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_6 (Length: 407)
Name: NF4089_low_6
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 6232433 - 6232821
Alignment:
| Q |
10 |
agaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacat |
109 |
Q |
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| T |
6232433 |
agaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacat |
6232532 |
T |
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| Q |
110 |
cggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataa |
209 |
Q |
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| T |
6232533 |
cggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataa |
6232632 |
T |
|
| Q |
210 |
ttcgtctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccat---gcgggttctccggtaatcatc |
306 |
Q |
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| T |
6232633 |
ttcctctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatc |
6232732 |
T |
|
| Q |
307 |
tccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagt |
395 |
Q |
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| T |
6232733 |
tccacgacggcgcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagt |
6232821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 384
Target Start/End: Original strand, 6221699 - 6222034
Alignment:
| Q |
58 |
gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca |
157 |
Q |
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| T |
6221699 |
gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg |
6221798 |
T |
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| Q |
158 |
aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgt |
257 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||| ||| | ||||||||||||| |
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| T |
6221799 |
aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacggtgattcgtcttctgccccaattcgaattaa |
6221898 |
T |
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| Q |
258 |
caacattaacatatctga----ct-----cattccatgcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgat |
348 |
Q |
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| T |
6221899 |
caacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagccatctccacaatagcgcaaccaagagcccatatatctgccggtgat |
6221998 |
T |
|
| Q |
349 |
tcataaacactatcattcactgcttctggtgacata |
384 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||| |
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| T |
6221999 |
tcataaacactctcgttcaccgcttctggtgacata |
6222034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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