View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_7 (Length: 394)
Name: NF4089_low_7
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 38816155 - 38816537
Alignment:
| Q |
12 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
111 |
Q |
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| T |
38816155 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
38816254 |
T |
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| Q |
112 |
acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
211 |
Q |
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| T |
38816255 |
acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
38816354 |
T |
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| Q |
212 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
311 |
Q |
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| T |
38816355 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
38816454 |
T |
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| Q |
312 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaac |
394 |
Q |
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| T |
38816455 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaac |
38816537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
225 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
324 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
325 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
374 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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