View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4089_low_9 (Length: 306)
Name: NF4089_low_9
Description: NF4089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4089_low_9 |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 6034230 - 6034406
Alignment:
| Q |
7 |
gcagcacagatctccaaactccaaacaccaaatttacacttcatcgcatccctcttctcctcagatatggcatccaacgtaagcttctctatcttttcta |
106 |
Q |
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| T |
6034230 |
gcagcacagatctccaaactccaaacaccaaattcacacttcatcgcatccctcttctcctcagacatggcatccaacgtaagcttctctatcttttcta |
6034329 |
T |
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| Q |
107 |
tttcattctttgcacttcaatcacaatgctatatctaataatcatatagatttattcaaaaactattaaattgttga |
183 |
Q |
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| T |
6034330 |
tttcattctttgcacttcaatcacaatgctatatctaataatcatatagatttattcaaaaactattaaattgttga |
6034406 |
T |
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Target: scaffold0350 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 5226 - 5191
Alignment:
| Q |
125 |
aatcacaatgctatatctaataatcatatagattta |
160 |
Q |
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| T |
5226 |
aatcacaatgctatatctaataatcatatagattta |
5191 |
T |
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