View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4090_high_8 (Length: 224)
Name: NF4090_high_8
Description: NF4090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4090_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 7032898 - 7033106
Alignment:
| Q |
1 |
gtagtagcaggaacaggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactac |
100 |
Q |
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| T |
7032898 |
gtagtagtaggaattggaaagaatgccaaacaggtataattcttttgtattaatgaatttttagttgattttatgagattgttgaacttgatagaactac |
7032997 |
T |
|
| Q |
101 |
aatatttaattcgaatccaatgaagtgtttataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| | | |
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| T |
7032998 |
aatatttaattcgaatccaatgaagtgtttataagtgagagagtttcccttacaagccatttttgtatttaattggcttgcatgagcttatctaatgaga |
7033097 |
T |
|
| Q |
201 |
taaatacct |
209 |
Q |
| |
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||||||||| |
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| T |
7033098 |
taaatacct |
7033106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 7043325 - 7043533
Alignment:
| Q |
1 |
gtagtagcaggaacaggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactac |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| || ||| |
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| T |
7043325 |
gtagtagcaggaactggaaagaaagccaaacaggtataattcttctgtattaatgaatttttagttgattttatgagattgttgaacatgataaaattac |
7043424 |
T |
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| Q |
101 |
aatatttaattcgaatccaatgaagtgtttataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataaaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
7043425 |
aatatttaattcaaatccaatgaagtgtttataagtgagagagtttacgttacaagccatttttgtatttaattggcttgcttgagcttatctaatgaga |
7043524 |
T |
|
| Q |
201 |
taaatacct |
209 |
Q |
| |
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||||||||| |
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| T |
7043525 |
taaatacct |
7043533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7035163 - 7035371
Alignment:
| Q |
1 |
gtagtagcaggaacaggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactac |
100 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035163 |
gtagtaacaggaactggaaagaatgccaaacaggtataattcttttgtagtaatgaatttttagttgattttatgagattgttgaacttcatagaactac |
7035262 |
T |
|
| Q |
101 |
aatatttaattcgaatccaatgaagtgtt--tataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataa |
198 |
Q |
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| ||||||||| ||||||||| ||||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
7035263 |
agtatttaattggaatccaatcaagtgtttatataagcaagggagcttaccttacaagccatttttgtatttaattggcttatttgagcttatctaatga |
7035362 |
T |
|
| Q |
199 |
aataaatac |
207 |
Q |
| |
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|||||||| |
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|
| T |
7035363 |
gataaatac |
7035371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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