View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4090_low_1 (Length: 765)
Name: NF4090_low_1
Description: NF4090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4090_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 315 - 751
Target Start/End: Original strand, 4682868 - 4683307
Alignment:
| Q |
315 |
atgttgaatataaagtcagttttaaagaccaaattatcttgatttaatacaaaactgaactcaaccgatacgaatctatagtgtatattctatttacacc |
414 |
Q |
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| T |
4682868 |
atgttgaatataaagtcaattttaaagaccaaattatcttgatttaatacaaaactgaactcaaccgatacgaatctatagtgtatattctatttacacc |
4682967 |
T |
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| Q |
415 |
aaattttatttaaaactgtcatatttttattagtaataattatcttatgatttataataagattcgattcacgacttgaacaataagtttctagattcaa |
514 |
Q |
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| T |
4682968 |
aaattttatttaaaactgtcatatttttattagtaataattatcttatgatttataataagattcgattcacgacttgaacaataaatttctagattcaa |
4683067 |
T |
|
| Q |
515 |
aatttaaatctcgatttgataacttagagttcttactaattaattagaaggg---aagaaaaaacaacaggtagccatacaataggaagggcaagatgtt |
611 |
Q |
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| T |
4683068 |
aatttaaatctcgatttgataacttagagttcttactaattaattagaagggaaaaaaaaaaaaaaacaggtagccatacaataggaagggcaagatgtt |
4683167 |
T |
|
| Q |
612 |
taagcttcaggcagaggatctatgaaacaaaacaggaatatcaccatgcctatgatcgctacaaacggtacacaaccttcagaagaatcctacagtccgt |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
4683168 |
taagcttcaggcagaggatctatgaaacaaaacaggaatatcaccatgcctatgatcgctacaaacgatacacaaccttcagaagaatcctacagtccat |
4683267 |
T |
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| Q |
712 |
atgtcctgttaccggaagggacgacaaatttgcacccctt |
751 |
Q |
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| T |
4683268 |
atgtcctgttaccggaagggacgacaaatttgcacccctt |
4683307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 4682622 - 4682871
Alignment:
| Q |
15 |
agggttaccatgatataaaccatgctttttaccactgttgtttgttttgaagagaggaggaccaagatgggaagtgtggctggggaggaaggactcactt |
114 |
Q |
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| T |
4682622 |
agggtcaccatgatataaaccatgctttttaccactgttgtttgttttgaagagaggaggaccaagatgggaagtgtggctggggaggaaggactcactt |
4682721 |
T |
|
| Q |
115 |
gagtcaagtttcagtggagccaacctattcatccctgctccaaattcctctttagagactttaattaataattttaagcaacagggtctggatattgaag |
214 |
Q |
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| T |
4682722 |
gagtcaagtttcagtggagccaacctattcatccctgctccaaattcctctttagagactttaattaataattttaagcaacagggtctggatattgaag |
4682821 |
T |
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| Q |
215 |
acctggtggttctatcaggtatatttatcattataaaacttcaataatgt |
264 |
Q |
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| T |
4682822 |
acctggtggttctatcaggtatatttatcattataaaacttcaataatgt |
4682871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 7896375 - 7896328
Alignment:
| Q |
437 |
atttttattagtaataattatcttatgatttataataagattcgattcac |
486 |
Q |
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|
| T |
7896375 |
atttttattagtaata--tatcttaagattcataataagattcgattcac |
7896328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 6430701 - 6430783
Alignment:
| Q |
455 |
tatcttatgatttataataagattcgattcacgacttgaacaataagtttctagattcaaaatttaaatctcgatttgataac |
537 |
Q |
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| T |
6430701 |
tatcttatgattcataataagatttgattcatcatttggaaaataggtcttttgattcacaatttgaatctcgatttgataac |
6430783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 486
Target Start/End: Original strand, 36826680 - 36826731
Alignment:
| Q |
433 |
tcatatttttattagtaataattatcttatgatttataataagattcgattcac |
486 |
Q |
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||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
36826680 |
tcatatttttattagtaatg--tatcttataattcataataagattcgattcac |
36826731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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