View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4090_low_4 (Length: 260)
Name: NF4090_low_4
Description: NF4090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4090_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2361424 - 2361676
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
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|||||||||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2361424 |
tggccaatacttggtcacctacaactattaaaaaattcacaaaaacctcatagaaccttaggtgcattggctgataaatatggacccttgttcactatta |
2361523 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2361524 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttggcaatatccaatcgccctaaacttga |
2361623 |
T |
|
| Q |
201 |
agcaactcaacatttgggttacaatggtgccatgtttgtgttagcaccctatg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2361624 |
agcaactcaacatttgggttacaatggtgccatgtttgcgttagcaccctatg |
2361676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2366028 - 2366231
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2366028 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgcattggctgataaatatggacccttgttcactatta |
2366127 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttga |
200 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||| |
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| T |
2366128 |
agattggttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtttcaccaaaattgacttggcaatatccactcgccctaaaggtga |
2366227 |
T |
|
| Q |
201 |
agca |
204 |
Q |
| |
|
|||| |
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|
| T |
2366228 |
agca |
2366231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2355741 - 2355976
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||| || |||| |||||||| ||||||| || |||||||||||||||||||||||||| || | |
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| T |
2355741 |
tggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttcaccatca |
2355840 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttga |
200 |
Q |
| |
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| |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||| ||| ||||| | ||||| |||| ||| |||||||||| |
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| T |
2355841 |
aacttggttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaacttgt |
2355940 |
T |
|
| Q |
201 |
agcaactcaacatttgggttacaatggtgccatgtt |
236 |
Q |
| |
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|||||| ||||||||| ||||||||| |||||||| |
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|
| T |
2355941 |
tgcaactgaacatttggcttacaatggagccatgtt |
2355976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2305720 - 2305877
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||||| ||||| ||||||| |||| ||||||||||||||||| || ||||| || | |
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| T |
2305720 |
tggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagggtcttaggtaccttagctgataaatatggaccattattcaccatca |
2305819 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgttt |
158 |
Q |
| |
|
|||||||||| ||||||||||| || | | ||||||||||||||| ||||||||||| |
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|
| T |
2305820 |
agcttggttctaaacgtgctttaattctcaacaattgggaaatggccaaggaatgttt |
2305877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 2338078 - 2338201
Alignment:
| Q |
38 |
cacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattg |
137 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| ||||||||||||||||| || ||||| || |||||||| | |||| |||||| | | | |||||| |
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|
| T |
2338078 |
cacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattattcaccatcaagcttggcactaaacatgctttaatactcaacaattg |
2338177 |
T |
|
| Q |
138 |
ggaaatggcaaaggaatgtttcac |
161 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
2338178 |
ggaaatggccaaggaatgtttcac |
2338201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 2349159 - 2349250
Alignment:
| Q |
70 |
gctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
161 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||| |||||| | ||| |||||||||||| || |||||||||||||| |
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|
| T |
2349159 |
gctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
2349250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 2264136 - 2264031
Alignment:
| Q |
44 |
cacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaat |
143 |
Q |
| |
|
||||||||| ||| ||||| || ||||| | |||||||||||| | ||||| || || |||||| | || ||||||||||| | |||||||||||||| |
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|
| T |
2264136 |
cacctcataaaacattaggcaccatggctaacaaatatggacccctattcaccataaaacttggtacaaatcgtgctttggtactaagcaattgggaaat |
2264037 |
T |
|
| Q |
144 |
ggcaaa |
149 |
Q |
| |
|
|||||| |
|
|
| T |
2264036 |
ggcaaa |
2264031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4303186 - 4303422
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||| | ||||||| ||||||||||||||||||||| |||||||| | ||||||||| || ||||| || | |
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|
| T |
4303186 |
tggccaatacttggtcaccttcaactattgttaggttcacaaggacctcatagaaccttaggtgcattggctgacacatatggacctttattcacaatca |
4303285 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttga |
200 |
Q |
| |
|
| |||||||| | | ||||||||| | || |||||||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||| |||||| |
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|
| T |
4303286 |
aacttggttcgagaaatgctttggtgctaagtaattgggaaatggctgaggaatgtttcaccaaaattgacttggcaatttccgatcgccctacacttga |
4303385 |
T |
|
| Q |
201 |
agcaactcaacatttgggttacaatggtgccatgttt |
237 |
Q |
| |
|
| ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
4303386 |
aacaactcaacatatgacttacaatggagccatgttt |
4303422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 41340088 - 41340206
Alignment:
| Q |
119 |
ctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaactcaacatttggg |
218 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || ||| ||||||| ||| | || ||||||||||||||||||| |||| ||||||||| |
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|
| T |
41340088 |
ctttggtgcttagcaattgggaaatggctgaggaatgttttaccaaagttgacttggcagtttcaaatcgccctaaacttgaagtaactaaacatttggc |
41340187 |
T |
|
| Q |
219 |
ttacaatggtgccatgttt |
237 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
41340188 |
ttacaatggagccatgttt |
41340206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 5806253 - 5806093
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcactatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || | ||||| |||| ||||||| |||||||||| | | ||||||| ||||||| | ||||| || | |
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|
| T |
5806253 |
tggccaatacttggtcacctcccaattttttgtggcacacaagcaccccatagaatcttaggtgccctaggtgataaacatggaccaatattcaccatca |
5806154 |
T |
|
| Q |
101 |
agcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
161 |
Q |
| |
|
|||||||| | |||| ||| || || | | ||||||||||||||| |||||||||||||| |
|
|
| T |
5806153 |
agcttggtcctaaacatgccttagtactcaacaattgggaaatggctaaggaatgtttcac |
5806093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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