View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4090_low_7 (Length: 227)

Name: NF4090_low_7
Description: NF4090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4090_low_7
NF4090_low_7
[»] chr6 (13 HSPs)
chr6 (5-77)||(5264443-5264515)
chr6 (5-110)||(5331972-5332077)
chr6 (10-73)||(5360758-5360821)
chr6 (5-94)||(5394164-5394253)
chr6 (157-227)||(5332507-5332577)
chr6 (153-211)||(5360576-5360634)
chr6 (171-227)||(5392446-5392502)
chr6 (22-85)||(5185068-5185131)
chr6 (129-184)||(5264608-5264663)
chr6 (5-75)||(5070612-5070682)
chr6 (5-75)||(5107975-5108045)
chr6 (5-75)||(5422042-5422112)
chr6 (5-75)||(5443943-5444013)
[»] scaffold0864 (2 HSPs)
scaffold0864 (6-77)||(4254-4325)
scaffold0864 (157-222)||(3913-3978)
[»] chr2 (2 HSPs)
chr2 (6-77)||(22589306-22589377)
chr2 (157-222)||(22589633-22589698)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 5264443 - 5264515
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttac 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5264443 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttac 5264515  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 5331972 - 5332077
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttaccagttccgattttagttctgcttccgg 104  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | ||| ||||||||||| | ||||||| |||||||||  || ||    
T  5331972 catatagatgtgaaacgaaggaagaatgagtatcctcccccctgaaacttaagaatatgtcgtgaatccttacaaattccgatattagttctggatctgg 5332071  T
Q  105 ttccgg 110  Q
    ||||||    
T  5332072 ttccgg 5332077  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 5360821 - 5360758
Alignment:
Q  10 agatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatcc 73  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  5360821 agatgtgaagtgaaggaagaacgagtatcctctcccctaaaacttaagaacacgtcgtgaatcc 5360758  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 5394253 - 5394164
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttaccagttccgattttagtt 94  Q
    |||| |||||||||  ||| ||||||||||| ||||| || |||||||||||||||||||| |||||||||||  |||||| ||||||||    
T  5394253 catagagatgtgaagtgaatgaagaacgagtgtcctcccctctgaaacttaagaacacgtcgtgaatccttactcgttccggttttagtt 5394164  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 5332507 - 5332577
Alignment:
Q  157 tgaaacctttctaacaacgaatttagaaaaccaattcagagatcgatttgagaactattattcaaaataat 227  Q
    ||||||||||||||| |  ||||||||||||||| | |||||||||||| ||||| |||||||||||||||    
T  5332507 tgaaacctttctaactataaatttagaaaaccaaatgagagatcgatttcagaacaattattcaaaataat 5332577  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 5360634 - 5360576
Alignment:
Q  153 tgaatgaaacctttctaacaacgaatttagaaaaccaattcagagatcgatttgagaac 211  Q
    |||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||||    
T  5360634 tgaatgaaacctctttaacaacgaatttagaaaaccaaatcagaggtcgatttcagaac 5360576  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 5392502 - 5392446
Alignment:
Q  171 caacgaatttagaaaaccaattcagagatcgatttgagaactattattcaaaataat 227  Q
    |||||| ||||| |||||||||||||||||||||| ||||| |||||| ||||||||    
T  5392502 caacgattttaggaaaccaattcagagatcgatttcagaacaattattgaaaataat 5392446  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 5185068 - 5185131
Alignment:
Q  22 aaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttaccagttccg 85  Q
    ||||||||||||||||| || || || |||||||||||||| ||||| |||||||| |||||||    
T  5185068 aaggaagaacgagtatcttcccctctaaaacttaagaacacatcatggatccttactagttccg 5185131  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 5264608 - 5264663
Alignment:
Q  129 gaaaagagtgattgaaatgttgaatgaatgaaacctttctaacaacgaatttagaa 184  Q
    ||||||||||| |||||||| ||| |  ||||||||||||||||||||||||||||    
T  5264608 gaaaagagtgaatgaaatgtggaaggtgtgaaacctttctaacaacgaatttagaa 5264663  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 5070612 - 5070682
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatcctt 75  Q
    |||| |||||||||  ||| ||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  5070612 catagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacatcatggatcctt 5070682  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 5107975 - 5108045
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatcctt 75  Q
    |||| |||||||||  |||||||| ||||||||| |  || |||||||||| |||||||||||| ||||||    
T  5107975 catagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacgtcatggatcctt 5108045  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 5422112 - 5422042
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatcctt 75  Q
    |||| |||||||||  ||| || | ||||||||||||||| || |||||||||||||| ||||| ||||||    
T  5422112 catagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatggatcctt 5422042  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 5444013 - 5443943
Alignment:
Q  5 catatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatcctt 75  Q
    |||| |||||||||  |||||||| ||||||||| |  || || |||||||||||||||||||| ||||||    
T  5444013 catacagatgtgaagtgaaggaagcacgagtatctttccctctaaaacttaagaacacgtcatggatcctt 5443943  T

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Target: scaffold0864 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 4325 - 4254
Alignment:
Q  6 atatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttac 77  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4325 atatagatgtgaaacgaaggtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttac 4254  T

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Target: scaffold0864; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 3978 - 3913
Alignment:
Q  157 tgaaacctttctaacaacgaatttagaaaaccaattcagagatcgatttgagaactattattcaaa 222  Q
    ||||||||||||||| || ||||||||||||||| | |||||||||||  ||||| ||||||||||    
T  3978 tgaaacctttctaactacaaatttagaaaaccaaatgagagatcgattatagaacaattattcaaa 3913  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 22589306 - 22589377
Alignment:
Q  6 atatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcatgaatccttac 77  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22589306 atatagatgtgaaacgaacgtagaacgagtatccactcccctgaaacttaagaacacatcatgaatccttac 22589377  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 22589633 - 22589698
Alignment:
Q  157 tgaaacctttctaacaacgaatttagaaaaccaattcagagatcgatttgagaactattattcaaa 222  Q
    ||||||||||||||| || ||||||||||||||| | |||||||||||  ||||| ||||||||||    
T  22589633 tgaaacctttctaactacaaatttagaaaaccaaatgagagatcgattatagaacaattattcaaa 22589698  T

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