View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_10 (Length: 427)
Name: NF4091_high_10
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 43 - 410
Target Start/End: Complemental strand, 32240187 - 32239820
Alignment:
| Q |
43 |
ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagtagcagcagaagcgaagaagggcggatcccgctggtagtgtatg |
142 |
Q |
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| T |
32240187 |
ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagcagcagcagaagcgaagaagggcggatcccgctggtagtgtatg |
32240088 |
T |
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| Q |
143 |
gaacagttggatttgaagaggctctattgtaagattaatagatcacattagaatacaaaaagcctgcatctctaacccattactttcaccataatatagc |
242 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240087 |
gaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatacaaaaagcctgcatctctaacccattactttcaccataatatagc |
32239988 |
T |
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| Q |
243 |
acacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaagaggtaaaaaacaaaatagaaatagcagatatagaacacagcta |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239987 |
acacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaagaggtaaaaaacaaaatagaaatagcagatatagaacacagcta |
32239888 |
T |
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| Q |
343 |
caaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctgg |
410 |
Q |
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| T |
32239887 |
caaaacctccatgcacagaaaaccgacagaaatcagcgccaaatgcggagaagggcggaactcgctgg |
32239820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 46470181 - 46470103
Alignment:
| Q |
327 |
atatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactc |
405 |
Q |
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| T |
46470181 |
atatagaacacagctacaaagcctccaagcacagaaaactgacataaatcagcgccaattgcggagaagagcggaactc |
46470103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 33435811 - 33435759
Alignment:
| Q |
358 |
cagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctgg |
410 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
33435811 |
cagaaaactgacagagttcagcgccaaacgcggagaagggcggatttcgctgg |
33435759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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