View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_12 (Length: 410)
Name: NF4091_high_12
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 28 - 402
Target Start/End: Complemental strand, 41484081 - 41483707
Alignment:
| Q |
28 |
agatctctcttacacattaattaggtcatcccagctaaccgtttttcttttaacacactcgaaattgaactctattatannnnnnngtgtgcttagacac |
127 |
Q |
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| T |
41484081 |
agatctctcttacacattaattaggtcatcccagttaaccgtttttcttttaacacactcgaaattgaactctattatatttttttgtgtgtttagacac |
41483982 |
T |
|
| Q |
128 |
atactagactcttaattcagtctagcttgttaaacaaactctaactgggtaaaacttttctatacctgggaggagatgattcactgcagcaactttcaaa |
227 |
Q |
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| T |
41483981 |
atactagactcttaattcagtctagcttgttaaacaaactctaattggttaaaacttttctatacctgggaggagatgattcactgcagcaactttcaaa |
41483882 |
T |
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| Q |
228 |
gcatttcactatacagtccgaaggtggatccatgtagaatgccacctgcaaaattgcacatcactactcatattttactaaaaatgcatacttaaatcat |
327 |
Q |
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| T |
41483881 |
gcatttcactatacagtctgaaggtggatccatgtagaatgccacctgcaaaattgcacatcactactcatattttactaaaaatgcatacttaaatcat |
41483782 |
T |
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| Q |
328 |
gttatagaactagaaaacctcatcaaataaagcaaacaaggaagtggctagtaattaaagaatagcgttcttttc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41483781 |
gttatagaactagaaaacctcatcaaataaagcaaacaaggaagtggctagtaattacagaatagcgttcttttc |
41483707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 41491832 - 41491729
Alignment:
| Q |
177 |
taaaacttttctatacctgggaggagatgattcactgcagcaactttcaaagcatttcactatacagtccgaaggtggatccatgtagaatgccacctgc |
276 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||| || || |||||||||||| |||||||||||||| |
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| T |
41491832 |
taaaacttttctatacctggggggagatgattcactgcagcaactttcaaagcattccacaacacaatctgagggtggatccatgaagaatgccacctgc |
41491733 |
T |
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| Q |
277 |
aaaa |
280 |
Q |
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|||| |
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| T |
41491732 |
aaaa |
41491729 |
T |
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