View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_13 (Length: 408)
Name: NF4091_high_13
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_13 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 5835288 - 5835674
Alignment:
| Q |
1 |
attatatgtgtcggtgtcagacatgacatgtgtctgatatcgggacacggttaatccaagaagtgtttttacttcatagttaaacggagtttacaatttg |
100 |
Q |
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| T |
5835288 |
attatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgagaagtgtttttgctttatagttaaacggagtttaaaagttg |
5835387 |
T |
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| Q |
101 |
caaaaagaattnnnnnnnnncaccatgtttttattaaattgttgaaaatggcaaacaatctagtctaggaaacagattatgtagagataaatcagtccta |
200 |
Q |
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| T |
5835388 |
caaaaagaattaaaagaaat-accatgtttttattaaattgttgaaaatggcaaacaatctagtctatgaaacagattatgtagagataaatcagtccaa |
5835486 |
T |
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| Q |
201 |
atgcagattaacaacttttgagtccaactatggcaaaaatagtatgtcagtcatgtggaagacc-aataaattgctaattcaaaagatatataccacaaa |
299 |
Q |
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| T |
5835487 |
atgcaaattaacaacttttgagtccaactatggcgaaaatagtatgtcagtcatgtggaaggccaaagaaattgctatttcaaaagatatataccacaaa |
5835586 |
T |
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| Q |
300 |
atatatcaaattcaaattcactaaagtatcaacatcgaataaagatttgtcaattgtacactgatttgattattaataaaatttgccg |
387 |
Q |
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| T |
5835587 |
gcatatcaaattcaaattcacaaaagtatgaacatcaaatacagatttgtaaattatgcactgacttggttattaataaattttgccg |
5835674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 53239 - 53297
Alignment:
| Q |
8 |
gtgtcggtgtcagacatgacatgtgtctgatatcgggacacggttaatccaagaagtgt |
66 |
Q |
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| T |
53239 |
gtgtcggtgtcggacatgacacgtgtccgacaccgggacacgtttaatccaagaagtgt |
53297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 2896137 - 2896074
Alignment:
| Q |
3 |
tatatgtgtcggtgtcagacatgacatgtgtctgatatcgggacacggttaatccaagaagtgt |
66 |
Q |
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| T |
2896137 |
tatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaatccaagaagtgt |
2896074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29163399 - 29163333
Alignment:
| Q |
1 |
attatatgtgtcggtgtcagacatgacatgtgtctgatatcgggacacggttaatccaagaagtgtt |
67 |
Q |
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| T |
29163399 |
attatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgtt |
29163333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35222979 - 35223044
Alignment:
| Q |
1 |
attatatgtgtcggtgtcagacatgacatgtgtctgatatcgggacacggttaatccaagaagtgt |
66 |
Q |
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| T |
35222979 |
attatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgt |
35223044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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