View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_17 (Length: 383)
Name: NF4091_high_17
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 24020411 - 24020787
Alignment:
| Q |
17 |
acaaagtataatcaataaaatgaaaacacagtcgcgacacaacacacaagataatcacctttaccaatgttgatctttgttgaatattgcattcactgga |
116 |
Q |
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| T |
24020411 |
acaaagtataatcaacaaaatgaaaacacagtcgcgacacaacacacaagataatcacctttaccaatgttgatctttgttgaatattgcattcactgga |
24020510 |
T |
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| Q |
117 |
acagttaacctgaaattcattctaatcaaaaacaaatgaattgattatcgagagggagaatttgctcatttacaagagagttataacatcaagcaaagaa |
216 |
Q |
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| T |
24020511 |
acagttaacctgaaattcattctaatcaaaaacaaatgaattgattatcgagagggagaatttgctcatttacaagagagttataatatcaagcaatgaa |
24020610 |
T |
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| Q |
217 |
tttgctgcaatcataagttagggtttttcattgtcttatagctgatttccattcactgagctgtgtcaatcaataattcaacgtgaacccgtgttat--- |
313 |
Q |
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| T |
24020611 |
tttgctgcaatcataagttagggtttttcattgtcgcatagctgattttcattcactgagctgtgtcaatcaatatttctacgtgaacccgtgttatgat |
24020710 |
T |
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| Q |
314 |
-----------------gatcatcactcaaggtatgatcccgtgtttctaatgactttgtgtactgtttcgtctctg |
373 |
Q |
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| T |
24020711 |
ggatatccctctattatgatcatcactcaaggtacgatccggtgtttctaatgactttgtgtactgtttcgtttctg |
24020787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 11563406 - 11563509
Alignment:
| Q |
72 |
cacctttaccaatgttgatctttgttgaatattgcattcactggaacagttaacctgaaattcattctaatcaaaaacaaatgaattgattatcgagagg |
171 |
Q |
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| T |
11563406 |
cacctttaccaatgtcaatctttgttgaatattgcattcac-gaaacaattagcctagaattcatttgaatcagagacaagtgaatcgattattgagagg |
11563504 |
T |
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| Q |
172 |
gagaa |
176 |
Q |
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||||| |
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| T |
11563505 |
gagaa |
11563509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 29592743 - 29592776
Alignment:
| Q |
72 |
cacctttaccaatgttgatctttgttgaatattg |
105 |
Q |
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| T |
29592743 |
cacctttaccaatgtagatctttgttgaatattg |
29592776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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