View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_23 (Length: 355)
Name: NF4091_high_23
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 14205875 - 14205703
Alignment:
| Q |
6 |
agcagcacagaaagagaaataaaactagaaaacgaatcatattttcctttgnnnnnnnttagtgtatatataaaataataatagcatataattatgtgta |
105 |
Q |
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| T |
14205875 |
agcatcacaaaaagagaaataaaactagaaaacgattcatattttcctttgaaaaaaattagtgtatatataaaataataatagcatataattatgtgta |
14205776 |
T |
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| Q |
106 |
ttatctgaaattgagtcaagtaatatactaataattttttccgttacttccttattaaaaatggttacaatat |
178 |
Q |
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| T |
14205775 |
ttatctgaaattgagtcaagtaatatactaataatttttttcgttacttccttattaaaaatggttacaatat |
14205703 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 14205688 - 14205633
Alignment:
| Q |
161 |
taaaaatggttacaatatactagtaattttgcttctttgtcaaacgagaatagaag |
216 |
Q |
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| T |
14205688 |
taaaaatggttacaatatactagtaattttgcttctttgccaaacgagaatagaag |
14205633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 14204541 - 14204456
Alignment:
| Q |
248 |
attaagtccttgaaaagatactcctaaagattgaat-aggagggctagtgttaaacttggcgccaactcataaacgataggaagagattgt |
337 |
Q |
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| T |
14204541 |
attaagtccttaaaaagatactccttaagcatgagttaggagggctagtgtt-----tggcgccaactcataaacgataggaagagattgt |
14204456 |
T |
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