View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_26 (Length: 341)
Name: NF4091_high_26
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 97 - 292
Target Start/End: Complemental strand, 5836155 - 5835961
Alignment:
| Q |
97 |
gaaagggttgaaattggtggcactagttgaaaattcatttatgtaaatctcaaattaatccaattcaagatattgagcctcttgaattggtaccgaggaa |
196 |
Q |
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| T |
5836155 |
gaaagggttgaaattggtggcactagttgaaaattcatttatgtaaatctcaaattaatccaattcaagatcttgagcctcatgaattggtactgaggaa |
5836056 |
T |
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| Q |
197 |
gggagaaattattattacttaaaagtgaaaataatggtcattttacaactgtctccgacgatatttaaaatttgtccttttacattatactttata |
292 |
Q |
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| T |
5836055 |
gggagaaattattattactt-aaagtgaaagtaattgtcattttacaactgtctccgacaatatttaaaatttgtccttttagattatactttata |
5835961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 5835730 - 5835687
Alignment:
| Q |
284 |
tactttataatatcaaactcttactactaaactggacaaatctg |
327 |
Q |
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| T |
5835730 |
tactttataatatcaaactcttactactaaactgaacaaatctg |
5835687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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