View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_28 (Length: 320)
Name: NF4091_high_28
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 34893738 - 34893435
Alignment:
| Q |
17 |
aaattaaactcaagaatttcaacaaaacacccgatgttgactgtgatttcgttaaactcaacacaagtcatgatccgttgatatcaactatttcccaaaa |
116 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34893738 |
aaattaaacttaagaatttcaacaaaacacgagatgttgactgtgatttcgttaaactcaacacaagtcatgatccgttgatatcaactatttcccaaaa |
34893639 |
T |
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| Q |
117 |
catggtccaaaaagtaacatactagaagataaaaacatcaactttaaacatgatgacattgatatcaactatttcccaaaagtaacataaaaaggcattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34893638 |
catggtccaaaaagtaacatactagaagataaaaacatcaactttaaacatgatgacattgatatcaactatttcccaaaagtaacataaaaaggcattt |
34893539 |
T |
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| Q |
217 |
aaagaaaggcactccatgcttcttttacgttggacaaacatgttttgcaccatacatgattgtgctgacaaggaacagaatggatccattcttggtttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34893538 |
aaagaaaggcactccatgcttcttttacgttggacaaacatgttttgcaccatacatgattgtgctgacaaggaacagaatggatccattcttggtttcc |
34893439 |
T |
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| Q |
317 |
aact |
320 |
Q |
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|||| |
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| T |
34893438 |
aact |
34893435 |
T |
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