View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_36 (Length: 290)
Name: NF4091_high_36
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 41380144 - 41379875
Alignment:
| Q |
19 |
tagagacccagaacttctgttgtagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcagg |
118 |
Q |
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| T |
41380144 |
tagagacccagaacttctgttgtagaacaccacatgaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcagg |
41380045 |
T |
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| Q |
119 |
atttcgttaaacctccagactagggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttg |
218 |
Q |
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| T |
41380044 |
atttcgttaaacctccagactagggcatcattgtcatcattcattctactttaaattgtgaataaacaatgtttctaagagtgttaggtcgaaatagttg |
41379945 |
T |
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| Q |
219 |
agtaacttaaatccatacccgtcaggaataattgagaccaattttccgaatcgaataggtcaaatctgtg |
288 |
Q |
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| T |
41379944 |
agtaacttaaatccatactcttcaggaataattgagaccaattttccgaatcaaataggtcaaatatgtg |
41379875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 8034077 - 8034319
Alignment:
| Q |
20 |
agagacccagaacttctgttgtagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcagga |
119 |
Q |
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| T |
8034077 |
agagacccagaacttatgttgcagaacaccatatgaaaattcctttcattgcttagaatggaagcaaagtgtagatcttcaaggaactcataatacagga |
8034176 |
T |
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| Q |
120 |
tttcgttaaacctccagact-agggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttg |
218 |
Q |
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| T |
8034177 |
tttggttaaacctccaaatttagggcatcattgccatcattcattctactttaaattgtgaataaataatgtttctaagagtgtttggtcgaaatagttg |
8034276 |
T |
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| Q |
219 |
agtaacttaaatccatacccgtcaggaataattgagaccaatt |
261 |
Q |
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| T |
8034277 |
agtaacttaaatccataccagttaggaataattgagatcaatt |
8034319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 7969703 - 7969588
Alignment:
| Q |
20 |
agagacccagaacttctgttgtagaacaccacataaaaattcctttcattgcttggaatggaagcaaagtgtagatcttcaaggaacccataatgcagga |
119 |
Q |
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||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
7969703 |
agagacccagaacttatgttgcagaacaccacatgaaaattcctttcattgcttagaatggaagcaaagtgtaaatcttcaaggaacctataatgcagga |
7969604 |
T |
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| Q |
120 |
tttcgttaaacctcca |
135 |
Q |
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||| |||||||||||| |
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| T |
7969603 |
tttggttaaacctcca |
7969588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 7969580 - 7969520
Alignment:
| Q |
201 |
gttaggtcgaaatagttgagtaacttaaatccatacccgtcaggaataattgagaccaatt |
261 |
Q |
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|||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
7969580 |
gttaggtcgaaatagttgagtaacataaatccataccagttaggaataattgagatcaatt |
7969520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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