View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_high_38 (Length: 277)

Name: NF4091_high_38
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_high_38
NF4091_high_38
[»] chr5 (1 HSPs)
chr5 (1-263)||(41627816-41628078)
[»] chr2 (12 HSPs)
chr2 (1-220)||(8379588-8379807)
chr2 (1-222)||(30424777-30424998)
chr2 (1-241)||(30468857-30469097)
chr2 (1-183)||(30384409-30384591)
chr2 (1-217)||(30437070-30437286)
chr2 (7-222)||(30483799-30484014)
chr2 (1-222)||(30430810-30431031)
chr2 (3-220)||(23783774-23783991)
chr2 (1-121)||(30394905-30395025)
chr2 (4-151)||(30475909-30476056)
chr2 (26-220)||(23768080-23768274)
chr2 (7-71)||(30403919-30403983)
[»] chr8 (4 HSPs)
chr8 (7-119)||(15852326-15852438)
chr8 (7-119)||(15859313-15859425)
chr8 (7-119)||(15845119-15845231)
chr8 (7-119)||(15866019-15866131)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 41627816 - 41628078
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627816 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 41627915  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627916 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 41628015  T
Q  201 aatacctaataaatcattcttattttctccaccttcctttaatattttcacccttttgttgat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628016 aatacctaataaatcattcttattttctccaccttcctttaatattttcacccttttgttgat 41628078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8379588 - 8379807
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||||||||||||||| || | | ||||||| ||||||||||||||||| |||| ||||||||||||||| | |||||||||||  ||||||||||| |    
T  8379588 tgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgcca 8379687  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||| ||||||||||||   | ||||||||||| | ||||||||| ||||  |||||||||||| ||| ||||||| | |||||||| ||||| |||    
T  8379688 agtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaag 8379787  T
Q  201 aatacctaataaatcattct 220  Q
    || |||||| || |||||||    
T  8379788 aagacctaacaagtcattct 8379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30424998 - 30424777
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||||||||| |||||||| | | ||||||| ||||||||||||||||| || ||||||||||||||||| |||   ||||| |||||||| |||||||    
T  30424998 tgtaatacttcttcccttgcacgttcttgccaatcagggtacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaa 30424899  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||| | |||||||||||  |||||||| |||| | ||||||| ||||||   ||||| || |||||||  ||||| ||||| |||| ||||| |||    
T  30424898 agtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccgtgttcttccatttctttgtgatttgactctaaaag 30424799  T
Q  201 aatacctaataaatcattctta 222  Q
     ||||||||||| |||| ||||    
T  30424798 tatacctaataagtcatcctta 30424777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30469097 - 30468857
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||||||||| |||||||| |  |||||||| || ||||||||||||||||| ||||||||||||||||| |||   ||||| |||||||| |||||||    
T  30469097 tgtaatacttcttcccttgcacgcgcttgccaatcggggtacctactcaataacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaa 30468998  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||| | |||||||||||  || ||||| |||| | ||||||| |||| |   ||||| ||||||||||  ||||| ||||| |||| ||||| |||    
T  30468997 agtagaatagcttgcattcctctatcacatcatcaagactcattccgacatccttattgttgccatgttcttccatttctttgtgatttgactctaaaag 30468898  T
Q  201 aatacctaataaatcattcttattttctccaccttccttta 241  Q
     |||||||| ||||||| |||| || || ||||| ||||||    
T  30468897 tatacctaacaaatcatccttagttgcttcacctgccttta 30468857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 30384591 - 30384409
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||| |||||||||||||| |  | |||||| |||||||||||||||||||||| ||||||||||||||| |||   |||||||||||||| |||||||    
T  30384591 tgtaacacttcctcccttgcacgggtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaaccgaagtagtctcttgacctgcaa 30384492  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttg 183  Q
    ||| |||||||||||||||||  | |||||| |||| | |||||||||||| |  ||||||| ||| ||| | ||||||||||    
T  30384491 agtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttg 30384409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30437286 - 30437070
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||| || || |||||||||||||| |||   ||||| ||||||   |||||||    
T  30437286 tgtaatacttcctcccttgcacgtgcttgccaatcagggtacctactcaacaacactattgtccaaacaagcaaaacagaagttgtctctgcacctgcaa 30437187  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||| | |||||||||||  |||||||| |||| | ||||||| ||||||   |||||  |||||||||  ||||| ||||| |||| ||||| |||    
T  30437186 agtagaatagcttgcattcctctattacatcgtcaagactcattccaacattcttattgttgtcatgttcttccatttctttgtgatttgactctaaaag 30437087  T
Q  201 aatacctaataaatcat 217  Q
     |||||||| |||||||    
T  30437086 tatacctaacaaatcat 30437070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 30484014 - 30483799
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtaga 106  Q
    |||||||| ||||| | ||||||||| | ||||| ||||||||||||||| |||||||||||||| |||  |||||| || |||| |||||||| |||||    
T  30484014 acttcctctcttgcacgtgcttgccaattagggtgcctactcaataatacaattgtccaaacaagcaaaactgaagtggtttcttcccctgcaaggtaga 30483915  T
Q  107 acaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataagaatacc 206  Q
    | | |||||||||||  |||||||| |||| ||||||||| ||||||   |||||    |  ||||||||||||||||| |||| ||| | |||||||||    
T  30483914 atagcttgcattccttgattacatcatcaagattcattccaacattcttattgttgttgttatctttaatttccttgtgatttgactcaagaagaatacc 30483815  T
Q  207 taataaatcattctta 222  Q
    |||||| |||||||||    
T  30483814 taataagtcattctta 30483799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30431031 - 30430810
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||||||||| |||||||| | | ||||||| || || ||||||||||| || ||||||||||||||||| |||   ||||| |||||||| |||||||    
T  30431031 tgtaatacttcttcccttgcacgttcttgccaatctggttacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttgtcctgcaa 30430932  T
Q  101 agtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataag 200  Q
    ||||||| | |||||||||||  |||||||| |||| | ||||||| ||||||   ||||| || |||||||  ||||| || || |||| ||||| |||    
T  30430931 agtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccttgttcttccatttctttttgatttgactctaaaag 30430832  T
Q  201 aatacctaataaatcattctta 222  Q
     ||||||||||| |||| ||||    
T  30430831 tatacctaataagtcatcctta 30430810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 23783774 - 23783991
Alignment:
Q  3 taatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaag 102  Q
    ||||||||||| |||||| | | ||||||| ||||||||||||||||| || ||||| ||||||||||| |||  |||||||||||||||||||||||      
T  23783774 taatacttccttccttgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaaca 23783873  T
Q  103 tagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataagaa 202  Q
    | ||| ||| ||||||||   | ||| ||||||| | ||| ||||| ||||  |  |||||||||||||||||||||  ||||||| | |||||  || |    
T  23783874 tggaataacctgcattccccgactacttcttcaagactcaatcccatattcttgacgtttccatgttctttaatttctctgtggttcgactctaggagga 23783973  T
Q  203 tacctaataaatcattct 220  Q
     ||||||||| |||||||    
T  23783974 gacctaataagtcattct 23783991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 30395025 - 30394905
Alignment:
Q  1 tgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaa 100  Q
    ||||| ||||||||||| || | || |||||| ||||||||||||||||| |||| ||||||||||||||| |||   |||||||| |||||||||||||    
T  30395025 tgtaacacttcctccctagcacgtgtttgccaatcagggtacctactcaacaatatcattgtccaaacaagcaaaaccgaagtagtttcttgccctgcaa 30394926  T
Q  101 agtagaacaacttgcattcct 121  Q
    | | |||||||||||||||||    
T  30394925 aatggaacaacttgcattcct 30394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 30476056 - 30475909
Alignment:
Q  4 aatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagt 103  Q
    ||||||||||||||||| |  |||||||| ||||| ||||||||||| || | ||||| ||||||||| |||   ||||| |||||||||||||||||||    
T  30476056 aatacttcctcccttgcacgagcttgccaatcaggatacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaaagt 30475957  T
Q  104 agaacaacttgcattcctgaattacatcttcaatattcattcccacat 151  Q
    |||| | ||||||||| |  |||||||| |||| | ||||||| ||||    
T  30475956 agaatagcttgcattcttctattacatcgtcaagactcattccgacat 30475909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 23768274 - 23768080
Alignment:
Q  26 cttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtagaacaacttgcattcctgaat 125  Q
    ||||||| || |||| ||||||||| || ||||| ||||||||||| |||  |||||||||||||||||||||||  | ||| ||| ||||||||   |     
T  23768274 cttgccaatctgggtgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaatatggaataacatgcattccccgac 23768175  T
Q  126 tacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataagaatacctaataaatcattct 220  Q
    ||| ||||||| | ||| ||||| ||||  |  ||||||||||||||||||||| |||||||| | |||||  || | ||||||||| |||||||    
T  23768174 tacttcttcaagactcaatcccatattcttgaagtttccatgttctttaatttctttgtggttcgactctaggaggagacctaataagtcattct 23768080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 30403983 - 30403919
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaag 71  Q
    |||||||| || || | ||||||||| ||||| || |||||||| |||| |||||||||||||||    
T  30403983 acttcctctctagctcgtgcttgccaatcaggatatctactcaacaatatcattgtccaaacaag 30403919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 15852326 - 15852438
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtaga 106  Q
    ||||||| |||||| | | ||||||| ||||| ||||| |  ||||| |||||||||||||| || ||| ||||||| |||||||||||||| ||||| |    
T  15852326 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgccaagtaaa 15852425  T
Q  107 acaacttgcattc 119  Q
    |||| ||||||||    
T  15852426 acaatttgcattc 15852438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 15859313 - 15859425
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtaga 106  Q
    |||||||||||||| | ||||||||| ||||| ||||| |  ||||| |||||||||||||| || ||| || |||| ||||||||||| |||| ||| |    
T  15859313 acttcctcccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaactttaagtcgtctcttgcccagcaaggtaaa 15859412  T
Q  107 acaacttgcattc 119  Q
    |||| ||||||||    
T  15859413 acaatttgcattc 15859425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 15845119 - 15845231
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtaga 106  Q
    ||||||| |||||| | | ||||||| ||||| ||||| |  ||||| |||||||||||||| || ||| ||||||| ||||||||||| |||| ||| |    
T  15845119 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgcccagcaaggtaaa 15845218  T
Q  107 acaacttgcattc 119  Q
    |||| ||||||||    
T  15845219 acaatttgcattc 15845231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 15866019 - 15866131
Alignment:
Q  7 acttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtaga 106  Q
    ||||||| |||||| | ||||||||| ||||| ||||| |  ||||| |||||||||||||| || ||| |||| || ||||||||||| |||| ||| |    
T  15866019 acttcctgccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaggtggtctcttgcccagcaatgtaaa 15866118  T
Q  107 acaacttgcattc 119  Q
    |||| ||||||||    
T  15866119 acaatttgcattc 15866131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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