View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_high_40 (Length: 268)

Name: NF4091_high_40
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_high_40
NF4091_high_40
[»] chr7 (6 HSPs)
chr7 (23-72)||(31322984-31323033)
chr7 (22-69)||(7974877-7974924)
chr7 (23-69)||(48589743-48589789)
chr7 (23-72)||(42808792-42808841)
chr7 (25-69)||(31324896-31324940)
chr7 (16-68)||(38555029-38555081)
[»] chr2 (7 HSPs)
chr2 (189-262)||(35081813-35081887)
chr2 (22-69)||(4286032-4286079)
chr2 (22-69)||(40220577-40220624)
chr2 (22-68)||(14002458-14002504)
chr2 (23-69)||(26544078-26544124)
chr2 (26-74)||(7780426-7780474)
chr2 (73-117)||(35084262-35084306)
[»] chr8 (4 HSPs)
chr8 (23-75)||(39277550-39277602)
chr8 (22-72)||(6013838-6013888)
chr8 (22-68)||(37651755-37651801)
chr8 (16-68)||(13782174-13782226)
[»] chr4 (7 HSPs)
chr4 (22-69)||(18884592-18884639)
chr4 (22-72)||(20208445-20208495)
chr4 (23-72)||(18411133-18411182)
chr4 (22-68)||(27872318-27872364)
chr4 (22-72)||(52469131-52469181)
chr4 (16-72)||(30703953-30704009)
chr4 (12-72)||(44010499-44010559)
[»] scaffold0188 (1 HSPs)
scaffold0188 (22-72)||(28004-28054)
[»] chr1 (5 HSPs)
chr1 (26-72)||(1167496-1167542)
chr1 (26-72)||(50269196-50269242)
chr1 (22-69)||(50036785-50036832)
chr1 (26-72)||(13535712-13535758)
chr1 (26-78)||(5844605-5844657)
[»] chr6 (2 HSPs)
chr6 (15-72)||(3385083-3385140)
chr6 (26-70)||(3177493-3177537)
[»] chr5 (2 HSPs)
chr5 (22-69)||(13838512-13838559)
chr5 (23-68)||(35651354-35651399)
[»] chr3 (5 HSPs)
chr3 (26-72)||(15294491-15294537)
chr3 (22-68)||(32592156-32592202)
chr3 (22-60)||(51755617-51755655)
chr3 (16-69)||(41612306-41612359)
chr3 (16-69)||(49265726-49265779)


Alignment Details
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 31323033 - 31322984
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  31323033 taatttacccgtatttctcagccaaaccacatgtgtcaacatcaattttc 31322984  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 7974924 - 7974877
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||    
T  7974924 gtaatttactcgtgtttctcagccaaacaacatgtgtcaacatcaatt 7974877  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 48589789 - 48589743
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    ||||||||| || |||||||||||||| ||||||||||||| |||||    
T  48589789 taatttactcgtgtttctcagccaaacaacatgtgtcaacaacaatt 48589743  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 42808792 - 42808841
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||||||||| |||||||||||||| ||||||||  ||| ||||||||    
T  42808792 taatttacttgtgtttctcagccaaacaacatgtgtatacaacaattttc 42808841  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 31324896 - 31324940
Alignment:
Q  25 atttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    ||||||| || |||||||| ||||||||||||||||||| |||||    
T  31324896 atttactcgtgtttctcagtcaaaccacatgtgtcaacaacaatt 31324940  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38555081 - 38555029
Alignment:
Q  16 atttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    ||||| |||||||||| |||||||||| |||||| | ||||||||||| ||||    
T  38555081 atttaagtaatttactcgtatttctcaaccaaactaaatgtgtcaacaacaat 38555029  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 35081887 - 35081813
Alignment:
Q  189 agcttatagtgatggctaaaaccaacactgagtaagatactcttcatgtttggaacacaa-atattatggaaaat 262  Q
    ||||||||||||||  ||||||||| ||||||||||  |||||||||||| ||||||||| ||||| ||||||||    
T  35081887 agcttatagtgatgattaaaaccaagactgagtaaggcactcttcatgttaggaacacaacatattttggaaaat 35081813  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 4286079 - 4286032
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| || |||||||||||||| ||||||||||||| |||||    
T  4286079 gtaatttactcgtgtttctcagccaaacaacatgtgtcaacaacaatt 4286032  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 40220624 - 40220577
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| || |||||||||||||| ||||||||||||| |||||    
T  40220624 gtaatttactagtgtttctcagccaaacaacatgtgtcaacaacaatt 40220577  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 14002504 - 14002458
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    |||||||||| || |||||||||||||||| ||||||||||| ||||    
T  14002504 gtaatttactcgtgtttctcagccaaaccaaatgtgtcaacagcaat 14002458  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 26544078 - 26544124
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    ||||||||| || |||||||||||||| ||||||||||||| |||||    
T  26544078 taatttactcgtgtttctcagccaaacaacatgtgtcaacaacaatt 26544124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 7780426 - 7780474
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttcca 74  Q
    ||||| ||| |||||||||||||||| ||||| ||||| ||||||||||    
T  7780426 tttacatgtgtttctcagccaaaccaaatgtgccaacaacaattttcca 7780474  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 35084306 - 35084262
Alignment:
Q  73 cataaacattttgatgtcttgttttcccctcttgctgttagtggt 117  Q
    ||||||||||||||| |||||||||  || |||||||||||||||    
T  35084306 cataaacattttgatctcttgttttttccccttgctgttagtggt 35084262  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 39277550 - 39277602
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttccat 75  Q
    ||||||||| || |||||||||||||||| ||||||||||| |||||||||||    
T  39277550 taatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaattttccat 39277602  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 6013888 - 6013838
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||    
T  6013888 gtaatttactcgtgattctcagccaaaccaaatgtgtcaacatcaattttc 6013838  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 37651801 - 37651755
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    |||||||||| || |||||||||||||||| ||||||||||| ||||    
T  37651801 gtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaat 37651755  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 13782226 - 13782174
Alignment:
Q  16 atttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    ||||| |||||||||| || ||||||||||||| || ||||||||||| ||||    
T  13782226 atttaagtaatttactcgtgtttctcagccaaatcaaatgtgtcaacaacaat 13782174  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 18884592 - 18884639
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| || |||||||||||||||| |||||||||||||||||    
T  18884592 gtaatttactcgtgtttctcagccaaaccaaatgtgtcaacatcaatt 18884639  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 20208495 - 20208445
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||||||| || |||||||||||||||| ||||||||||| ||||||||    
T  20208495 gtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaattttc 20208445  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 18411182 - 18411133
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||||||| || |||||||||||||||| ||||||||||| ||||||||    
T  18411182 taatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaattttc 18411133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 27872364 - 27872318
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    |||||||||| || |||||||||||||||| || |||||||||||||    
T  27872364 gtaatttactcgtgtttctcagccaaaccaaatatgtcaacatcaat 27872318  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 52469131 - 52469181
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||||||| || ||||||||||||| || || |||||||||||||||||    
T  52469131 gtaatttactcgtgtttctcagccaaatcaaatatgtcaacatcaattttc 52469181  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 30704009 - 30703953
Alignment:
Q  16 atttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||| |||| ||||| || | |||||||| ||||| ||||||||||||||||||||    
T  30704009 atttaagtaaattactcgtgtgtctcagcctaaccaaatgtgtcaacatcaattttc 30703953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 44010559 - 44010499
Alignment:
Q  12 aaatatttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||||||  ||| ||||| |||||||||||||||||| ||||||||  ||| ||||||||    
T  44010559 aaatattttcgtattttacatgtatttctcagccaaacaacatgtgtatacaacaattttc 44010499  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 28004 - 28054
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||||||| || |||||||||||||| ||||||||||||| ||||||||    
T  28004 gtaatttactcgtgtttctcagccaaactacatgtgtcaacaacaattttc 28054  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 1167542 - 1167496
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||    
T  1167542 tttacttgtgtttctcagccaaaccacatgtgtcaacggcaattttc 1167496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 50269196 - 50269242
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||    
T  50269196 tttactcgtgtttctcagccaaaccacatgtgtcaacaacaattttc 50269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 50036832 - 50036785
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    ||||||||||||| ||||||||||||| || ||||||||||| |||||    
T  50036832 gtaatttacttgtgtttctcagccaaatcaaatgtgtcaacagcaatt 50036785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 13535712 - 13535758
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||| |||||||||||| | ||||||||||||||| |||||||||    
T  13535712 tttactcgtatttctcagcgataccacatgtgtcaacgtcaattttc 13535758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5844657 - 5844605
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttccataaa 78  Q
    ||||| ||| |||||||||||||| ||||||||  ||| ||||||||||||||    
T  5844657 tttacatgtgtttctcagccaaacaacatgtgtatacaacaattttccataaa 5844605  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 3385083 - 3385140
Alignment:
Q  15 tatttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    |||||| |||| ||||| || |||||||||||||||||| ||||||||| ||||||||    
T  3385083 tatttaggtaaattactcgtgtttctcagccaaaccacacgtgtcaacaacaattttc 3385140  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 3177537 - 3177493
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattt 70  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||||||    
T  3177537 tttacatgtgtttctcagccaaaccaaatgtgtcaacaacaattt 3177493  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 13838512 - 13838559
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| || |||||||||||||| ||||||||||||| |||||    
T  13838512 gtaatttactcgtgtttctcagccaaacaacatgtgtcaacagcaatt 13838559  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 35651399 - 35651354
Alignment:
Q  23 taatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    ||||||||| || |||||||||||||||| ||||||||||| ||||    
T  35651399 taatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaat 35651354  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 15294537 - 15294491
Alignment:
Q  26 tttacttgtatttctcagccaaaccacatgtgtcaacatcaattttc 72  Q
    ||||| |||||||||||||||||||| | ||||||||| ||||||||    
T  15294537 tttacatgtatttctcagccaaaccaaacgtgtcaacaacaattttc 15294491  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 32592202 - 32592156
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaat 68  Q
    |||||||||| || |||||||||||||||| ||||||||||| ||||    
T  32592202 gtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaat 32592156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 51755655 - 51755617
Alignment:
Q  22 gtaatttacttgtatttctcagccaaaccacatgtgtca 60  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  51755655 gtaatttactcgtatttctcagccaaaccaaatgtgtca 51755617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 41612359 - 41612306
Alignment:
Q  16 atttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    |||||||||| ||||| || | |||||||||||||  |||||||||||||||||    
T  41612359 atttatgtaaattactcgtgtgtctcagccaaacctaatgtgtcaacatcaatt 41612306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 49265779 - 49265726
Alignment:
Q  16 atttatgtaatttacttgtatttctcagccaaaccacatgtgtcaacatcaatt 69  Q
    ||||| |||| |||||||||| ||||| |||||||| ||||||||||| |||||    
T  49265779 atttaagtaaattacttgtatgtctcaaccaaaccaaatgtgtcaacaacaatt 49265726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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