View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_45 (Length: 241)
Name: NF4091_high_45
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31759903 - 31759704
Alignment:
| Q |
1 |
atgacttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaaactctcaatactttgttctctccata |
100 |
Q |
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| T |
31759903 |
atgacttgcactacaagttatgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaaactcttaatactttgttctctccatc |
31759804 |
T |
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| Q |
101 |
accaccttctcattctctattcttctctttctaaattcatccattattttgattacttgatttgcaagaaacaattgttgcactaatattcacgacgtta |
200 |
Q |
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| T |
31759803 |
accactttctccttctctattcttctctctctaaattcaaccattattttgattacttaatttgcaagaaacaattgttgcactaatattcacgacgtta |
31759704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 32635761 - 32635694
Alignment:
| Q |
120 |
ttcttctctttctaaattcatccattattttgattacttgatttgcaagaaacaattgttgcactaatatt |
190 |
Q |
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| T |
32635761 |
ttcttctctctctaa-ttcatccattaatttgattacttgattt--aagaaacaattgctgcgctaatatt |
32635694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 36019921 - 36019988
Alignment:
| Q |
4 |
acttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataa |
71 |
Q |
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| T |
36019921 |
acttgcactccaagttatgtgtatataaatagattgtactctcctaatttcattaatcaatgaaataa |
36019988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 29150104 - 29149987
Alignment:
| Q |
14 |
caagttctgtgtatataaatagttgttaatcatctattttcattaatcaatg-aaataacaaactctcaat-actttgttc--tctccataaccacctt- |
108 |
Q |
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| T |
29150104 |
caagttatgtgtatataaatagattgtactcttctattttcattaatcaatgaaaaaaacaagctcccaataaattttttctttctccataaccaccttc |
29150005 |
T |
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| Q |
109 |
ctcattctctattcttct |
126 |
Q |
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| T |
29150004 |
ctcattctctcttcttct |
29149987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 2799182 - 2799252
Alignment:
| Q |
4 |
acttgcactacaagttctgtgtatataaatagttgttaatcatctattttcattaatcaatgaaataacaa |
74 |
Q |
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| T |
2799182 |
acttgcattacaagttaagtgtatataaattgattgtattgttctattttcattaatcaatgaaataacaa |
2799252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 1183626 - 1183710
Alignment:
| Q |
91 |
tctctccataaccaccttctcattctctattcttctctttct----aaattcatccattattttgattacttgatttgcaagaaa |
171 |
Q |
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| T |
1183626 |
tctctccataaccactttctcattctccatttttctcattctctcaatattcatccattattaagattacttgaatagcaagaaa |
1183710 |
T |
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