View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_high_46 (Length: 239)

Name: NF4091_high_46
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_high_46
NF4091_high_46
[»] chr8 (5 HSPs)
chr8 (79-239)||(36838549-36838709)
chr8 (84-239)||(36838328-36838484)
chr8 (84-239)||(36837884-36838043)
chr8 (84-231)||(36838116-36838263)
chr8 (80-151)||(44074009-44074080)
[»] chr4 (7 HSPs)
chr4 (79-239)||(26629070-26629230)
chr4 (79-177)||(26629321-26629419)
chr4 (79-150)||(50942959-50943030)
chr4 (182-227)||(22732856-22732901)
chr4 (80-128)||(22206633-22206681)
chr4 (207-239)||(23142150-23142182)
chr4 (183-227)||(23142549-23142593)
[»] chr5 (2 HSPs)
chr5 (79-239)||(8717136-8717296)
chr5 (207-239)||(1997900-1997932)
[»] chr1 (5 HSPs)
chr1 (18-181)||(39335789-39335954)
chr1 (112-188)||(17285530-17285606)
chr1 (192-239)||(39335766-39335813)
chr1 (86-157)||(383836-383907)
chr1 (207-239)||(19040234-19040266)
[»] chr2 (3 HSPs)
chr2 (79-239)||(28504594-28504755)
chr2 (181-239)||(9792899-9792957)
chr2 (79-129)||(43782743-43782793)
[»] chr7 (4 HSPs)
chr7 (83-157)||(4658674-4658748)
chr7 (183-239)||(11650326-11650382)
chr7 (207-239)||(11650546-11650578)
chr7 (207-239)||(11650743-11650775)
[»] chr3 (4 HSPs)
chr3 (78-150)||(5742144-5742216)
chr3 (78-150)||(5779103-5779175)
chr3 (207-239)||(33815785-33815817)
chr3 (207-239)||(48608773-48608805)
[»] scaffold0001 (1 HSPs)
scaffold0001 (79-150)||(406575-406646)
[»] chr6 (2 HSPs)
chr6 (79-128)||(24848354-24848403)
chr6 (207-239)||(30340463-30340495)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 36838709 - 36838549
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattc 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| | |||||||    
T  36838709 atcctttattataaaagctagagttgattagctagcatgtttgccctaatcactaacttttttccctcctaagcatgtatctaatctcagccgttgattc 36838610  T
Q  179 aaatttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    ||||| |||| ||||||||||| || | |||||||||||||||||||||||||||||||||    
T  36838609 aaattcattgctaatctaatctcagccgttgattcaaactctattttcaaactactcattt 36838549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 36838484 - 36838328
Alignment:
Q  84 ttattataaaagctatagttgattagctagcatgtttgccctaattactagctttttt-ccctcctaagtatgtatctaatctcagtctttgattcaaat 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| | |||||||||||    
T  36838484 ttattataaaagctagagttgattagctagcatgtttgccctaatcactagctttttttccctcctaagcatgtatctaatctcagccgttgattcaaat 36838385  T
Q  183 ttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    | |||| |||| |||||| ||   |||||||||||| ||||||||||||||||||||    
T  36838384 tcattgctaatttaatctcagctgttgattcaaactttattttcaaactactcattt 36838328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 36838043 - 36837884
Alignment:
Q  84 ttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagta----tgtatctaatctcagtctttgattca 179  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| ||    ||||||||||||||| | ||||||||    
T  36838043 ttattataaaagctagagttgattagctagcatgtttgccctaatcgctagcttttttccctcctaattaagcatgtatctaatctcagccgttgattca 36837944  T
Q  180 aatttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    |||| ||| ||||| |||||| || | |||||||||||||||||||||||||||||||||    
T  36837943 aattcatttttaatttaatctcagccgttgattcaaactctattttcaaactactcattt 36837884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 36838263 - 36838116
Alignment:
Q  84 ttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattcaaatt 183  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||||| |||| | ||||||||||||    
T  36838263 ttattataaaagctagagtttattagctagcatgtttgcgctaatcactagtttttttccctcataagcatgtatctaatttcagccgttgattcaaatt 36838164  T
Q  184 tattgttaatctaatctaagtcattgattcaaactctattttcaaact 231  Q
     |||  |||| |||||| ||   ||||||||||||||||||| |||||    
T  36838163 cattactaatttaatctcagctgttgattcaaactctatttttaaact 36838116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 44074080 - 44074009
Alignment:
Q  80 tcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaag 151  Q
    ||||||||||||||||||| | ||||| |||||||||||||||| ||||  || || |||||||||||||||    
T  44074080 tcctttattataaaagctagacttgatgagctagcatgtttgccttaatcccttgcatttttccctcctaag 44074009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 26629230 - 26629070
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattc 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| | ||||||     
T  26629230 atcctttattataaaagctagagttgattagctagcatgtttgccctaatcactagcttttttccctcctaagcatgcatctaatctcagccgttgatta 26629131  T
Q  179 aaatttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    ||||| |||| ||||||||||| || | |||||||||||||||||||||||||||| ||||    
T  26629130 aaattcattgctaatctaatctcagccgttgattcaaactctattttcaaactacttattt 26629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 26629419 - 26629321
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgatt 177  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| | ||||||    
T  26629419 atcctttattataaaagctagagttgattagctagcatgtttgccctaatcactagcttttttccctcctaagcatgcatctaatctcagccgttgatt 26629321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 50943030 - 50942959
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaa 150  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||||||  |||||| |||||||||||||    
T  50943030 atcctttattataaaagctagagttgtctagctatcatgtttgccctaatctctagctattttccctcctaa 50942959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 22732856 - 22732901
Alignment:
Q  182 tttattgttaatctaatctaagtcattgattcaaactctattttca 227  Q
    ||||||| ||||||||||| |  |||||||||||||||||||||||    
T  22732856 tttattgctaatctaatctcacccattgattcaaactctattttca 22732901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 22206633 - 22206681
Alignment:
Q  80 tcctttattataaaagctatagttgattagctagcatgtttgccctaat 128  Q
    ||||||||||||||||||| | ||||| |||||||||| ||| ||||||    
T  22206633 tcctttattataaaagctagacttgatgagctagcatgcttgtcctaat 22206681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 23142182 - 23142150
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  23142182 ttgattcaaactctattttcaaactcctcattt 23142150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 23142593 - 23142549
Alignment:
Q  183 ttattgttaatctaatctaagtcattgattcaaactctattttca 227  Q
    |||||| ||||||||||| |  |||||||||||||||||||||||    
T  23142593 ttattgctaatctaatcttacccattgattcaaactctattttca 23142549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 8717296 - 8717136
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattc 178  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||    |||||||    
T  8717296 atcctttattataaaagttagagttgattagctagcatgttcgccctaatcactagcttttttccctcctaaacatgtatctaatctcaacagttgattc 8717197  T
Q  179 aaatttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    ||||| |||| |||| |||||| |  | |||||||||||||||||||||||||||||||||    
T  8717196 aaattcattgctaatataatctcaaccgttgattcaaactctattttcaaactactcattt 8717136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 1997932 - 1997900
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  1997932 ttgattcaaactctattttcaaactcctcattt 1997900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 39335954 - 39335789
Alignment:
Q  18 gtaaccatctgtgtatacgaataccaacgtaacatgacccttcccnnnnnnnnnnca--taacatcctttattataaaagctatagttgattagctagca 115  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |           |  |||||||||||||||||||||||| ||||||||||||||||    
T  39335954 gtaaccatctgtatatatgaataccaacgtaacatgacccttcactaaaaaaaaaaacgtaacatcctttattataaaagctagagttgattagctagca 39335855  T
Q  116 tgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattcaaa 181  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  39335854 tgtttgccctaatcactagcttttttccctcctaagcatgtatctaatctcagtcgttgattcaaa 39335789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 17285530 - 17285606
Alignment:
Q  112 agcatgtttgccctaattactagcttttttccctcctaagtatgtatctaatctcagtctttgattcaaatttattg 188  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| | |||||| ||||| ||||    
T  17285530 agcatgtttgccctaatcactagcttttttccctcctaagcacgtatctaatctcagccgttgattaaaattcattg 17285606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 39335813 - 39335766
Alignment:
Q  192 atctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  39335813 atctaatctcagtcgttgattcaaactctattttcaaactactcattt 39335766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 383836 - 383907
Alignment:
Q  86 attataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgta 157  Q
    |||||||||| || ||||||| ||||||||||||| |||||||   | || ||||||||||||||| |||||    
T  383836 attataaaagttagagttgatgagctagcatgttttccctaatccgttgcatttttccctcctaagcatgta 383907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 19040266 - 19040234
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  19040266 ttgattcaaactctattttcaaactcctcattt 19040234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 28504755 - 28504594
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagctttt-ttccctcctaagtatgtatctaatctcagtctttgatt 177  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||| |||||||||||| ||||||| ||||||||   ||||||    
T  28504755 atcctttattataaaagctagagttgattatctagcatgtttgtcctaatcactagcttttattccctcctaagcatgtatcaaatctcagctgttgatt 28504656  T
Q  178 caaatttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
     ||||| ||||||||||||||||  | | |||||||||| ||||||||||||||||||||||    
T  28504655 aaaattcattgttaatctaatctccgccgttgattcaaattctattttcaaactactcattt 28504594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9792899 - 9792957
Alignment:
Q  181 atttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||    
T  9792899 atttattgttaatctaatctcagccgttgattcaaactctattttcaaactcctcattt 9792957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 43782743 - 43782793
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaatt 129  Q
    |||||||||||||||||||| | ||| || |||| ||||||||||||||||    
T  43782743 atcctttattataaaagctagacttggttggctaccatgtttgccctaatt 43782793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 4658748 - 4658674
Alignment:
Q  83 tttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaagtatgta 157  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||  || || |||||| |||||||| |||||    
T  4658748 tttattataaaagctagacttgatgagctagcatgtttgccctaatcccttgcatttttctctcctaagcatgta 4658674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 11650326 - 11650382
Alignment:
Q  183 ttattgttaatctaatctaagtcattgattcaaactctattttcaaactactcattt 239  Q
    |||||| ||||||||||| |  | ||||||||||||||||||||||||| |||||||    
T  11650326 ttattgctaatctaatctcaaccgttgattcaaactctattttcaaactcctcattt 11650382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 11650546 - 11650578
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  11650546 ttgattcaaactctattttcaaactcctcattt 11650578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 11650743 - 11650775
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  11650743 ttgattcaaactctattttcaaactcctcattt 11650775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 5742216 - 5742144
Alignment:
Q  78 catcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaa 150  Q
    |||||||||| |||||||||| | ||| || |||| |||||||||||||||  ||| | ||||||||||||||    
T  5742216 catcctttatcataaaagctagacttggttggctaccatgtttgccctaatccctaacatttttccctcctaa 5742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 5779175 - 5779103
Alignment:
Q  78 catcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaa 150  Q
    |||||||||| |||||||||| | ||| || |||| |||||||||||||||  ||| | ||||||||||||||    
T  5779175 catcctttatcataaaagctagacttggttggctaccatgtttgccctaatccctaacatttttccctcctaa 5779103  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 33815817 - 33815785
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  33815817 ttgattcaaactctattttcaaactcctcattt 33815785  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 48608805 - 48608773
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  48608805 ttgattcaaactctattttcaaactcctcattt 48608773  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 406575 - 406646
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaattactagcttttttccctcctaa 150  Q
    |||||||||||||||||||| | ||| || || | ||||||||  |||||  ||||||||||||||||||||    
T  406575 atcctttattataaaagctacacttggttggcaaacatgtttgatctaatacctagcttttttccctcctaa 406646  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 24848403 - 24848354
Alignment:
Q  79 atcctttattataaaagctatagttgattagctagcatgtttgccctaat 128  Q
    |||||||||||||||||||| | |||   |||||||||||||||||||||    
T  24848403 atcctttattataaaagctagacttgccaagctagcatgtttgccctaat 24848354  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 30340495 - 30340463
Alignment:
Q  207 ttgattcaaactctattttcaaactactcattt 239  Q
    ||||||||||||||||||||||||| |||||||    
T  30340495 ttgattcaaactctattttcaaactcctcattt 30340463  T

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