View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4091_high_47 (Length: 239)
Name: NF4091_high_47
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_47 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 6804095 - 6803874
Alignment:
| Q |
18 |
cttggtaaaggaaaggtgaacttgaaactcacttcaggaaaaatcctctcattaagtaatgttctccatgtttctgatatgaattataatttagtgtctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6804095 |
cttggtaaaggaaaggtgaacttgaaactcacttcaggaaaaatcctctcattaagtaatgttctccatgttcctgatatgaattataatttagtgtctg |
6803996 |
T |
|
| Q |
118 |
tatctatattgagcaaagcgggcataaaaactaattttgatttagacaaagttctactttcaaaatgtgggggttttgtaggcaaaggtttttatagtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6803995 |
tatctatattgagcaaagcgggcataaaaactaattttgattcaggcaaagttctactttcaaaatgtgggggctttgtaggcaaaggtttctatagtaa |
6803896 |
T |
|
| Q |
218 |
tggtttatttgttttagatgtt |
239 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
6803895 |
tggtttatttattttagatgtt |
6803874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 14059899 - 14060055
Alignment:
| Q |
73 |
gtaatgttctccatgtttctgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaagttct |
172 |
Q |
| |
|
|||||||| | ||||| || |||||| ||||||||| |||||||| |||||||||||||||||||| ||| | | |||||| | | |||||||| | |
|
|
| T |
14059899 |
gtaatgttttacatgtgcctcatatgagttataatttggtgtctgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaagtttt |
14059998 |
T |
|
| Q |
173 |
actttcaaaatgtgggggttttgtaggcaaaggtttttatagtaatggtttatttgt |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
14059999 |
actttcaaaatgtgggggctttgtaggcaaaggattttatagtaatggtgtatttgt |
14060055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 26972729 - 26972569
Alignment:
| Q |
69 |
ttaagtaatgttctccatgtttctgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaag |
168 |
Q |
| |
|
|||||||||||| | |||| || |||||| ||||||||| |||| ||| |||||||||||||||||||| ||| | | |||||| | | |||||| |
|
|
| T |
26972729 |
ttaagtaatgttttatatgtgcctcatatgagttataatttggtgtatgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaag |
26972630 |
T |
|
| Q |
169 |
ttctactttcaaaatgtgggggttttgtaggcaaaggtttttatagtaatggtttatttgt |
229 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
26972629 |
ttttactttcaaaatgtgggggctttgtaggcaaaggattttatagtaacgatttatttgt |
26972569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 53730588 - 53730464
Alignment:
| Q |
69 |
ttaagtaatgttctccatgtttctgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaag |
168 |
Q |
| |
|
|||||||||||| | |||| || |||||| ||||||||| |||||||| |||||||||||||||| ||| ||| | | |||||| | | |||||| |
|
|
| T |
53730588 |
ttaagtaatgttttatatgtgcctcatatgagttataatttggtgtctgtgtctatattgagcaaagtgggtgtaacagtcacttttgaatcaaacaaag |
53730489 |
T |
|
| Q |
169 |
ttctactttcaaaatgtgggggttt |
193 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
53730488 |
tcttactttcaaaatgtgggggttt |
53730464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University