View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_49 (Length: 235)
Name: NF4091_high_49
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 43180877 - 43180657
Alignment:
| Q |
2 |
cttgtgctagtactataaccactcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttct |
101 |
Q |
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| T |
43180877 |
cttgggctagtactataaccactcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttct |
43180778 |
T |
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| Q |
102 |
tgaagtagttgttgtcaaaagaagtagaagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgt |
201 |
Q |
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| T |
43180777 |
tgaagtagttgttgtcaaaagaactaggagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgt |
43180678 |
T |
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| Q |
202 |
gctagcaaatgcagcatttat |
222 |
Q |
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||||||||||||||||||||| |
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| T |
43180677 |
gctagcaaatgcagcatttat |
43180657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 43195225 - 43195022
Alignment:
| Q |
9 |
tagtactataaccactcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttcttgaagta |
108 |
Q |
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||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
43195225 |
tagtactgtagccactcactatggagttggtggatccgccgttaaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcttgaagta |
43195126 |
T |
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| Q |
109 |
gttgttgtcaaaagaagtagaagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgtgctagca |
208 |
Q |
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| T |
43195125 |
gttgttgtcaaatgaagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgtatttgggcaatttgattgtcttgtactagca |
43195026 |
T |
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| Q |
209 |
aatg |
212 |
Q |
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|||| |
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| T |
43195025 |
aatg |
43195022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 43190184 - 43189994
Alignment:
| Q |
20 |
ccactcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttcttgaagtagttgttgtcaa |
119 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| || ||||| |||||||| |
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| T |
43190184 |
ccactcactattgagttagtggacccgccgttgaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcctgtagtagcagttgtcaa |
43190085 |
T |
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| Q |
120 |
aagaagtagaagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgtgctagcaaa |
210 |
Q |
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| T |
43190084 |
aagaagtgggagtatggagatcaagaggtgccaaattgttgtcccctgatcctgatgtctttgggcaattagattgccttgtgctagcaaa |
43189994 |
T |
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